PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g673170.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 328aa MW: 37454.4 Da PI: 6.06

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g673170.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	33	55	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H Pd.00g673170.m01 33 CSyeGCGKTFIDAGALRKHSHIH 55 77779**************7766 PP
2	zf-C2H2	16.7	2.1e-05	60	84	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H Pd.00g673170.m01 60 YVCHyeGCGKKFLDSSKLKRHFLIH 84 9********************8877 PP
3	zf-C2H2	21.5	6.1e-07	90	114	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk Fs nL++H++tH Pd.00g673170.m01 90 YRCNfeGCGKAFSLDFNLRSHMKTH 114 99**********************9 PP
4	zf-C2H2	17.8	9.5e-06	120	144	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi++H Pd.00g673170.m01 120 HICPypDCGKRYAHEYKLKNHISSH 144 679999******************6 PP
5	zf-C2H2	14.1	0.00014	184	209	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H Pd.00g673170.m01 184 YACPyeGCEKAYIHEYKLKLHLRReH 209 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MPSDTIKALK EKSKETVAPE PEPEPTTEVL FLCSYEGCGK TFIDAGALRK HSHIHGERQY 60 VCHYEGCGKK FLDSSKLKRH FLIHTGERDY RCNFEGCGKA FSLDFNLRSH MKTHSQENYH 120 ICPYPDCGKR YAHEYKLKNH ISSHHEKSVM VDVPKYATPP AEKQIKTPKP PAGGYGSASS 180 DRPYACPYEG CEKAYIHEYK LKLHLRREHP GHMSDENAEN APNNADNEMD EASDQDAYAG 240 KRVNGKSQKQ NRPKPNLKFP PAKVVQRKGA TPSPATMNTM KKPWPVKDEV VYEEEDSEET 300 EEDRDNVEDG WRYGENNDDD DEETEDED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-126	C2H2 family protein