PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g674050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 886aa MW: 103411 Da PI: 7.3006

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g674050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	126	145	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Pd.00g674050.m01 126 CPFHLKTGACRFGQRCSRVH 145 ******************99 PP
2	zf-CCCH	25.8	1.8e-08	255	282	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ Pd.00g674050.m01 255 WKVAICGEYMKSRykTCSRGTACNFIHC 282 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence
MQIASLINPF CGAVVLVYGM QDVSAVENEN DGNEVDDWDY IEEGPAEIIW QGNEIIVKKK 60 RIKVPKRNTE QQSRKEDCDR PTSNPLPPQS EAFSDYKNSS MSAQQLIENV AQQVPHFGTE 120 QDKAHCPFHL KTGACRFGQR CSRVHFYPDK SSTLLIKNMY NGPGLAWEQD EVLEHTDEEV 180 ERCYEEFYED VHTEFLKFGE IINFKVCRNG AFHLRGNVYI HYKSLDSAVL AHQSINGRYF 240 AGKQISCEFI NVTRWKVAIC GEYMKSRYKT CSRGTACNFI HCFRNPGGDY EWADSDRPAP 300 KYWVRKMVAL FGYSDADEKQ MVEENFGQLR NSSKMTMADS ERYGLRRSRS RGRDYSSFVG 360 SGRRYDSEDY VLKDAERQRH TGDDRHRGKT LDEDRCEENK NLKDYHCRKS RRSDTEFDRQ 420 LLDREEDRDR HHGHTRKSSR QRNRDHKNKT YENESDGDLS DRARNRVAQH GCTRETSSQQ 480 RKGEFLDEYG DWQNKNHEVD RDWSDRDKDR DAYHDNRKSS GHKRKVGCPD NHNDSKNRAH 540 DMDEEWSDSN SKGGKHHSRR KRFRHISKAS EFLNHRGRTT RSCSYELSDD LLENDAERNP 600 SHARKRSKRL DEVSDISDED RFPTQNLEHR HDRLSLEMRE AGALVKKLKS DGTHESSSLG 660 QDGERYRSHD FDIRYISDVH MDKQDRWEPE DGSVEIFHNS KTKAGSSESY ESGRPGPYNV 720 RGESSDFDSE DQYESDKVAH SKHQKSRRKS THDDRKHDSE NRSLCSSQSS HRRHSNRLEA 780 TDSSEDNNES GRKHNQKHHA DHRSRDHKQD HKSRSFKLIV PSPILRYVTS DDVVEFNGVF 840 KDIKVEEMVS LLSCFVWQGK NLTCSFQSQD TARRVAEVQL ECKVKK

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence

MQIASLINPF CGAVVLVYGM QDVSAVENEN DGNEVDDWDY IEEGPAEIIW QGNEIIVKKK  60
RIKVPKRNTE QQSRKEDCDR PTSNPLPPQS EAFSDYKNSS MSAQQLIENV AQQVPHFGTE  120
QDKAHCPFHL KTGACRFGQR CSRVHFYPDK SSTLLIKNMY NGPGLAWEQD EVLEHTDEEV  180
ERCYEEFYED VHTEFLKFGE IINFKVCRNG AFHLRGNVYI HYKSLDSAVL AHQSINGRYF  240
AGKQISCEFI NVTRWKVAIC GEYMKSRYKT CSRGTACNFI HCFRNPGGDY EWADSDRPAP  300
KYWVRKMVAL FGYSDADEKQ MVEENFGQLR NSSKMTMADS ERYGLRRSRS RGRDYSSFVG  360
SGRRYDSEDY VLKDAERQRH TGDDRHRGKT LDEDRCEENK NLKDYHCRKS RRSDTEFDRQ  420
LLDREEDRDR HHGHTRKSSR QRNRDHKNKT YENESDGDLS DRARNRVAQH GCTRETSSQQ  480
RKGEFLDEYG DWQNKNHEVD RDWSDRDKDR DAYHDNRKSS GHKRKVGCPD NHNDSKNRAH  540
DMDEEWSDSN SKGGKHHSRR KRFRHISKAS EFLNHRGRTT RSCSYELSDD LLENDAERNP  600
SHARKRSKRL DEVSDISDED RFPTQNLEHR HDRLSLEMRE AGALVKKLKS DGTHESSSLG  660
QDGERYRSHD FDIRYISDVH MDKQDRWEPE DGSVEIFHNS KTKAGSSESY ESGRPGPYNV  720
RGESSDFDSE DQYESDKVAH SKHQKSRRKS THDDRKHDSE NRSLCSSQSS HRRHSNRLEA  780
TDSSEDNNES GRKHNQKHHA DHRSRDHKQD HKSRSFKLIV PSPILRYVTS DDVVEFNGVF  840
KDIKVEEMVS LLSCFVWQGK NLTCSFQSQD TARRVAEVQL ECKVKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-148	C3H family protein