PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g707660.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 540aa MW: 59989.2 Da PI: 8.6614

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g707660.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	371	393	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Pd.00g707660.m01 371 FECTTCNKVFRSYQALGGHRASH 393 89**********99999998887 PP
2	zf-C2H2	10.9	0.0015	450	472	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp+C k+F++ L H r+H Pd.00g707660.m01 450 HACPICLKVFPSGQALGGHKRSH 472 67******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MELEDQQFKH LCKFCSKSFP CGRSLGGHMR SHLTNNSAET EEKLIIGKVK LPSANNVNSD 60 FETGPHHQPG YGLRENPKKT WRLADSSEDT SLLPDKFCRE CGKGFQSWKA LFGHMKCHSE 120 KERVVNSINS FDEEEEEDSW TCANQKLLMD SQSDNETTTP NRRRRSRRRR TRYMGTTTSS 180 SNFSIANAAS SSVSEIEQEQ EEVALCLMML KRDAGHWGGL KFVAHDSSDN NSVFSEAPSS 240 GRTNRVNADI KGKVSVCSGI EILKLKKKLN KKTLELGNLD SDFSKHGSRM KKEELLSAVG 300 FSKNDKLDKK MELAQPQLGS NNKCNSSKRK FQESYDFESR SEQSLKTLST TRGDVLDSEA 360 VCKSSQKRSK FECTTCNKVF RSYQALGGHR ASHKKIKGCF ASKVQSSENT IETDLSPEPT 420 SDSKLSKSCN NENPIKHDVK AEISTENKGH ACPICLKVFP SGQALGGHKR SHLIGGSAEN 480 KNSQTIVIQK PAAPEARDFL DLNLPAPVEE ESSSSHAAAF KPWWVGSSHK HEALVGLISN

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MELEDQQFKH LCKFCSKSFP CGRSLGGHMR SHLTNNSAET EEKLIIGKVK LPSANNVNSD  60
FETGPHHQPG YGLRENPKKT WRLADSSEDT SLLPDKFCRE CGKGFQSWKA LFGHMKCHSE  120
KERVVNSINS FDEEEEEDSW TCANQKLLMD SQSDNETTTP NRRRRSRRRR TRYMGTTTSS  180
SNFSIANAAS SSVSEIEQEQ EEVALCLMML KRDAGHWGGL KFVAHDSSDN NSVFSEAPSS  240
GRTNRVNADI KGKVSVCSGI EILKLKKKLN KKTLELGNLD SDFSKHGSRM KKEELLSAVG  300
FSKNDKLDKK MELAQPQLGS NNKCNSSKRK FQESYDFESR SEQSLKTLST TRGDVLDSEA  360
VCKSSQKRSK FECTTCNKVF RSYQALGGHR ASHKKIKGCF ASKVQSSENT IETDLSPEPT  420
SDSKLSKSCN NENPIKHDVK AEISTENKGH ACPICLKVFP SGQALGGHKR SHLIGGSAEN  480
KNSQTIVIQK PAAPEARDFL DLNLPAPVEE ESSSSHAAAF KPWWVGSSHK HEALVGLISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	7e-50	C2H2 family protein