PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g711580.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 225aa MW: 26126.4 Da PI: 8.0408

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g711580.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.2e-19	66	119	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Pd.00g711580.m01 66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 119 55679************************************************9 PP
2	HD-ZIP_I/II	119.2	2.2e-38	66	155	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rls++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l Pd.00g711580.m01 66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKQKLQEEVMKLKTIL 155 9*************************************************************************************9766 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MDWNSNLRHL VSRPEPSFGF LYNYNYDCYP PGMEMKHQAM MSESSQGLVP GLDRNHSSYG 60 CSSQDKKKRL STDQLESLER SFQEEIKLDP DRKMKLSREL GLQPRQIAVW FQNRRARWKA 120 KQLERLYDAL KQEYDVVSKE KQKLQEEVMK LKTILRDEVA RKQVSTGYTE ISGEETVEST 180 SVAIRSSNKG GGTSQHQVQE CNYLFNVEEY NPVSPPFWGA LPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	95	KKKRLSTDQLESLERSFQEEIKLDPDRKMK
2	114	122	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-57	HD-ZIP family protein