PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g713530.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 317aa MW: 34975 Da PI: 9.4403

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g713530.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.6	5e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++a+ Pd.00g713530.m01 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELNATQREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQAD 99 7******************************************************************************************** PP DUF260 94 lallkee 100 l +k+e Pd.00g713530.m01 100 LYNAKKE 106 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELNATQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQADL YNAKKELATY MGPQAMLSIL 120 QPPPTYMPQQ LQGNASSSAV SPYTMSPMMG ISTGPTSGQL MIREPQQQQQ QQQMFEAQQL 180 AAAVAAREQQ EMFRSFDQSK QSMQQGQEHV RFNSGFDLSP GSVTVSGFTQ MAGAVCNAVS 240 PSLALGSYSK PNSLKGSIRT SNHSRRSCSK SPIQARRAVG VWVPLVDGNF FSSSCLPRFF 300 IQLIFILVHI FRIQLEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	7e-83	LBD family protein