PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g720900.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 561aa MW: 61544.8 Da PI: 7.5583

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g720900.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.2e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Pd.00g720900.m01 59 KGGWTPQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	62.8	7e-20	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W++Ia+ ++ gR +kqc++rw+++l Pd.00g720900.m01 111 KGPWTQEEDDKIIELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	54.7	2.4e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Pd.00g720900.m01 163 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MEEVKLEECC LENKQSTAAS SSSVSEGSGS AILKSPGVCS PASTSPTHRR TSGPIRRAKG 60 GWTPQEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVAKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRI 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPAAKNGSQ NGAKETSKST 240 ATKRLLVCST KGSDSTAQTS SGNADVCKLD EDGKDQFESS APHQDLGASS SVLPNEPADS 300 EGVECQLRSS FRDLSCCNSE SGSKFENFAV NSKPQIESII NSQAESENCG FNNLIDEDRV 360 KRTPVPVETP GYGSLYYEPL LESCGPFDSG FSSMRCFQHD YSSSPNVSPI SFYTPPCVKG 420 SGLCNRSPES ILKMAAKTFP NTPSILRKRK NTSQGHLPPN KIGLVDCESV REVLNVSDEQ 480 ERHKNSAEMS GSQEESLCES PTSQGISTIG PNGKAFNASP PYRLRARRTA VFKSVEKQLE 540 FTCDKEYDDG SDLGHALYKG G

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MEEVKLEECC LENKQSTAAS SSSVSEGSGS AILKSPGVCS PASTSPTHRR TSGPIRRAKG  60
GWTPQEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVAKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRI  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPAAKNGSQ NGAKETSKST  240
ATKRLLVCST KGSDSTAQTS SGNADVCKLD EDGKDQFESS APHQDLGASS SVLPNEPADS  300
EGVECQLRSS FRDLSCCNSE SGSKFENFAV NSKPQIESII NSQAESENCG FNNLIDEDRV  360
KRTPVPVETP GYGSLYYEPL LESCGPFDSG FSSMRCFQHD YSSSPNVSPI SFYTPPCVKG  420
SGLCNRSPES ILKMAAKTFP NTPSILRKRK NTSQGHLPPN KIGLVDCESV REVLNVSDEQ  480
ERHKNSAEMS GSQEESLCES PTSQGISTIG PNGKAFNASP PYRLRARRTA VFKSVEKQLE  540
FTCDKEYDDG SDLGHALYKG G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-166	MYB family protein