PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g725670.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 219aa    MW: 24625.5 Da    PI: 4.5781
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g725670.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.63e-268101196
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+l+++C+++C++apyf +e+   +f  +h +FGas+++++l+ lp +er  a  ++++e +ara dP+yG+v  i   q ql+++++
  Pd.00g725670.m01   8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEVHARAVDPIYGCVLNI---QAQLDKAHE 97 
                       7*********************999856*************************************************8655...555555555 PP

            DUF260  93 elal 96 
                       +la+
  Pd.00g725670.m01  98 QLAR 101
                       5554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS  60
ERAVASWTMT FEVHARAVDP IYGCVLNIQA QLDKAHEQLA RAVAPVANPN QDLENSNEQS  120
EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV NIPTENVADG  180
WVNNEGTSSM SFFDMEWSFE DVDELLVDPW FSTYISNIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.15e-36LBD family protein