PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g732150.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 499aa MW: 54334.5 Da PI: 7.7083

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g732150.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.7e-10	129	153	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Pd.00g732150.m02 129 GEKDCAHYMLTRTCKFGELCKFDHP 153 7889********************8 PP
2	zf-CCCH	28.3	2.9e-09	180	206	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ Pd.00g732150.m02 180 PGEPDCPYFIKTQRCKFGMRCKFNHPK 206 5789*********************96 PP
3	zf-CCCH	37.7	3.5e-12	229	253	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Pd.00g732150.m02 229 EPPCAFYLKTGQCKFGATCKFHHPK 253 79*********************96 PP
4	zf-CCCH	38.4	2e-12	305	330	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Pd.00g732150.m02 305 PGEPDCPFYLKTGSCKYGATCRYNHP 330 5789*********************9 PP
5	zf-CCCH	37.3	4.5e-12	393	414	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C++G++Ck++H+ Pd.00g732150.m02 393 ECDYYMKTGECRFGEQCKYHHP 414 7********************8 PP
6	zf-CCCH	40.2	5.4e-13	445	470	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p Pd.00g732150.m02 445 GVAICVYYLKTGTCKYGATCKFDHPP 470 5789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MSSHLYGYGA AQSAAAAAGL SSVYTSRALT DPTLRYLSGS DPFASATDHH SRSSSMYLAT 60 SHFMSQSSWP APDVEPGVPG VKRPSEALYH QSFMGAYNTI GQEAWYSALA KRPRYESASN 120 LPIYPQRPGE KDCAHYMLTR TCKFGELCKF DHPIWVPEGG IPDWKEVPLV APSESLPERP 180 GEPDCPYFIK TQRCKFGMRC KFNHPKEKLA AAVASENADV FALPERPSEP PCAFYLKTGQ 240 CKFGATCKFH HPKDIQIQIP SAEQENKIGE TGTTIQPEGT GFAVKLPVSF SPALLYNSKE 300 LPVRPGEPDC PFYLKTGSCK YGATCRYNHP DRYDFCAAIN PPIGAISHSI VAPPAAGLNI 360 GVINPAASIY QTLAQPTVGG GQTVYPQRVG QIECDYYMKT GECRFGEQCK YHHPIDRSAV 420 ALSTTKPVQQ QNVKLTLAGL PRREGVAICV YYLKTGTCKY GATCKFDHPP PGEVMGMAAS 480 QGASGGEAKA DDFTQEQQQ

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MSSHLYGYGA AQSAAAAAGL SSVYTSRALT DPTLRYLSGS DPFASATDHH SRSSSMYLAT  60
SHFMSQSSWP APDVEPGVPG VKRPSEALYH QSFMGAYNTI GQEAWYSALA KRPRYESASN  120
LPIYPQRPGE KDCAHYMLTR TCKFGELCKF DHPIWVPEGG IPDWKEVPLV APSESLPERP  180
GEPDCPYFIK TQRCKFGMRC KFNHPKEKLA AAVASENADV FALPERPSEP PCAFYLKTGQ  240
CKFGATCKFH HPKDIQIQIP SAEQENKIGE TGTTIQPEGT GFAVKLPVSF SPALLYNSKE  300
LPVRPGEPDC PFYLKTGSCK YGATCRYNHP DRYDFCAAIN PPIGAISHSI VAPPAAGLNI  360
GVINPAASIY QTLAQPTVGG GQTVYPQRVG QIECDYYMKT GECRFGEQCK YHHPIDRSAV  420
ALSTTKPVQQ QNVKLTLAGL PRREGVAICV YYLKTGTCKY GATCKFDHPP PGEVMGMAAS  480
QGASGGEAKA DDFTQEQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein