PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g747210.m03
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 455aa    MW: 51459.3 Da    PI: 8.3489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g747210.m03genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06731127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +kt+lC  ++r G C + ++C+FaHg+
  Pd.00g747210.m03  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                      69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGFNITVHY YVTHVIPCNG  60
RRDSGGDDLR DKLERRYSPR RRYSPERDAR GRHVLREYSP SRSLERENFE YSFGNSKRRK  120
KQHLDGQSDI SGSLRISNET EHEAKETNSR GVLEEQLKQL QSEINMLDHC RSQLGVYLEE  180
KSQEVDSLTS KIKELEAQLY KEKEDCKRIS SKVKKFVKAH SRNSRIQDQL KRSQVRLNKL  240
GDQLALDIYG NDVNEEDSSI NIVSDGDGET TGFPVTPHNE RLNDASPSKI RLEAIRDNAK  300
ESKQSAHSTR GHLTTSSRPK KLSRWNIHPA QSNFDKKNEA VSNAIGSPKQ LANEGKHDRR  360
KTASSSILSA DMLKISESAP VVPSTSMAAH PVDTEVEIEP EDKIEMVGKA SGKIEEGAAY  420
ENVSFSLPLP PPPIPKNNYS QYEGDDEIID VQGAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-43C3H family protein