PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g749900.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27742.3 Da    PI: 6.8604
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g749900.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.1e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s
  Pd.00g749900.m01  9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59
                      59***********************************************96 PP
2K-box62.31.9e-2176162691
             K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                       g++  +++++e+++ el+k+++e+++L+ ++ ++ GedL+   +++L +Le+qLe+s++++R++K e+l +qi++l+   k++q++ 
  Pd.00g749900.m01  76 GTRiFQHNDTEYMNAELRKMRRETHSLELSLQRYTGEDLSCVRFEDLVELEHQLEESVNRVRARKFEVLQQQIDNLRATIKAHQDAA 162
                       555567899********************************************************************9999888765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE  60
SSSMEELIQR YQVARGTRIF QHNDTEYMNA ELRKMRRETH SLELSLQRYT GEDLSCVRFE  120
DLVELEHQLE ESVNRVRARK FEVLQQQIDN LRATIKAHQD AAFGHEQAHE AEQVENLQIL  180
PKSEEHRHVL EQFPFGGEEQ PSSVLKLAMP QTQFNPYSLQ PPHQPNLLDF NLSGRSIYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-53MIKC_MADS family protein