PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g750440.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 232aa    MW: 25304.4 Da    PI: 6.8568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g750440.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034122144123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C++sF++   L  H  +H
  Pd.00g750440.m01 122 YECKTCNRSFPSFQALGGHRASH 144
                       99**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MEGQEELVLS SDQASQTIMI KGKRTKRPRP QSPNGVVATG TSSSSSACGG GGAMGGDHEY  60
NYYGNSPTTS GEIYESTEEE EDMANCLILL AQGDHVTVNP KQIFEQRLAQ TSNMGKAGFF  120
VYECKTCNRS FPSFQALGGH RASHKKPKAM STEEKKPAPA HFIPASPFEE FEDQSKQFIK  180
YKSSPPPVIS SQIGSKPKIH ECSICGSEFT SGQALAILAQ IPNCRELFFH WI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12630KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-37C2H2 family protein