PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g760550.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 461aa MW: 50721.9 Da PI: 8.9161

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g760550.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g760550.m01 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	11.7	0.00081	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g760550.m01 157 WKCDKCSKIYAVQSDWKAHSKTC 179 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD HQHPHPTNKI KKKRSLPGNP 60 DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKDQIKKR 120 AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG 180 TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESAKLSASQL TATNTTTNPN IMTPQISLFP 240 FQNPPPPFTT ISLTPWDPPH HQNPNPNLNH HLIKTESHHH NHFPTTQSHK GLLTSPFQNL 300 HLSTHPSSKP STSSAHLSAT ALLQKAATVG SASSAAASAG QQAQSAGLTV GEFGTASLMN 360 MISTDYLGEF TSGDLATWQK TDRLTRDFLG LTGDGTGNHN VGAVNVVKDM LTYAGSVEFH 420 QQQQQPYDQP LRGHNNSLLL KPQGFGFAET TAAASETWGD C

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD HQHPHPTNKI KKKRSLPGNP  60
DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKDQIKKR  120
AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESAKLSASQL TATNTTTNPN IMTPQISLFP  240
FQNPPPPFTT ISLTPWDPPH HQNPNPNLNH HLIKTESHHH NHFPTTQSHK GLLTSPFQNL  300
HLSTHPSSKP STSSAHLSAT ALLQKAATVG SASSAAASAG QQAQSAGLTV GEFGTASLMN  360
MISTDYLGEF TSGDLATWQK TDRLTRDFLG LTGDGTGNHN VGAVNVVKDM LTYAGSVEFH  420
QQQQQPYDQP LRGHNNSLLL KPQGFGFAET TAAASETWGD C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-107	C2H2 family protein