PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g764710.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 387aa MW: 42741.6 Da PI: 6.4553

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g764710.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.6	1.7e-27	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++ ++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ara dP+yGa++ il+lq+q+ + +a Pd.00g764710.m01 8 PCGACKFLKKRCKRGFIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQA 100 7*******************999856************************************************************* PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g764710.m01 101 QLDEAHEQL 109 **99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MSSRTFNPCG ACKFLKKRCK RGFIFAPYFM HEEAITDFSS IHNVFGANKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP IYGATSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN 120 QDLENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV 180 NIPTENVADG WVNNEGQIAS GASSGDIALK FGEYILPEML GTFALSVGSA VGMEFWARWA 240 HRALWHSSLW HMHVSHHQPR DGPFELNDIF AIINVVPAIA LLSYGFFNKG LFPGLCFGAG 300 LGITTFGMAY MFVHDGLVHR RFPVGPIADV PYLQKVAAAH YLHHSCILNG VPYGLFLGPK 360 VLAISDGKQA LDYNPSSCTK NFVVSFM

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MSSRTFNPCG ACKFLKKRCK RGFIFAPYFM HEEAITDFSS IHNVFGANKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP IYGATSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN  120
QDLENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV  180
NIPTENVADG WVNNEGQIAS GASSGDIALK FGEYILPEML GTFALSVGSA VGMEFWARWA  240
HRALWHSSLW HMHVSHHQPR DGPFELNDIF AIINVVPAIA LLSYGFFNKG LFPGLCFGAG  300
LGITTFGMAY MFVHDGLVHR RFPVGPIADV PYLQKVAAAH YLHHSCILNG VPYGLFLGPK  360
VLAISDGKQA LDYNPSSCTK NFVVSFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	1e-37	LBD family protein