PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g771910.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 425aa    MW: 47573.7 Da    PI: 7.3215
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g771910.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.81.4e-25104205199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +gD+vvF+  +
  Pd.00g771910.m01 104 FAKILTPSDANNGGGFSVPRFCADSIfpalnyqAEPPVQ--TLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSVVFM--R 192
                       89*********************999****985444444..9************************************************..6 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +s++e++v+v+r+
  Pd.00g771910.m01 193 NSRGEMFVGVRRA 205
                       6999******996 PP
2Auxin_resp54.64.7e-192443002883
        Auxin_resp  28 vekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       +e vekal+v +s+GmR+km++etedss+ ++ +Gt ++vs  d+  W++S+Wr+L+
  Pd.00g771910.m01 244 AEVVEKALNVFWSAGMRVKMSVETEDSSRMTWfQGTLSSVSIPDNGPWQRSPWRMLQ 300
                       67899**************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MPPTPHPPSH HHPHSHSYSP HRPIDPKIWR ACAGNSVQIP ILHSRPLILC RISAVHFLAD  60
PTTDEVFAKL LLLPIPNHEP TNRHEPPNDD VFDDADETDK VVSFAKILTP SDANNGGGFS  120
VPRFCADSIF PALNYQAEPP VQTLSVTDLH GVVWDFRHIY RGTPRRHLLT TGWSKFVNHK  180
MLVAGDSVVF MRNSRGEMFV GVRRAVRSTV SSDCASRWSS HISGGATTTM RLKTEDQEGS  240
GRKAEVVEKA LNVFWSAGMR VKMSVETEDS SRMTWFQGTL SSVSIPDNGP WQRSPWRMLQ  300
VTWDEPEVLQ NAKRVSPWQV DYVASTPSIH TAFPPAKRFR APMSPGLLTN AEEEFFFPVP  360
GAPNSTMGQL NASLLNYNTF PAGMQGARQD LYCAVDYGVH KLWEYNNVGK RYEDISVLGQ  420
RPSEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-133ARF family protein