PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g778420.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 23201.8 Da PI: 8.2757

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g778420.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.6	1e-13	4	36	24	56
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ e++ +LAk lgL+ rq+ +WFqNrRa++k Pd.00g778420.m01 4 KLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 36 6788999*************************9 PP
2	HD-ZIP_I/II	105.3	4.7e-34	3	72	22	91
HD-ZIP_I/II 22 ekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n+ L++++++L++el Pd.00g778420.m01 3 NKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKKFDALKADNDVLQDHNNKLQAEL 72 89*****************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MGNKLEPERK MQLAKALGLQ PRQIAIWFQN RRARWKTKQL EKDYDVLKKK FDALKADNDV 60 LQDHNNKLQA ELLSMKSKDS NEAGLNNINN LKKETDQGSW SNGSENSSDH HHHHLNLDIS 120 RTPATTNSSP SNSQQTNGKN LFPSSLRPTS ITQLLQGSSR SDLQCLKVDQ MIQDESLCSM 180 FNGIDQEQQQ GYWPWPEQHH FH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	39	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-52	HD-ZIP family protein