PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g782410.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26472.1 Da PI: 8.4481

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g782410.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.6	1e-25	7	50	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + qvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye++s Pd.00g782410.m01 7 KWQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCS 50 569***************************************96 PP
2	K-box	97.9	1.5e-32	75	164	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL+ slk+iRs++++ +l+q+ +lq+ke++l+e+nk+L+++l Pd.00g782410.m01 75 AREALELSSQQEYLKLKARYEALQRNQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQCMLDQLTDLQRKEHMLNEANKTLKQRL 164 556666789******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MIARGRKWQV TFAKRRNGLL KKAYELSVLC EAEVALIIFS NRGKLYEFCS SSSMLKTLER 60 YQKCNYGAPE TNVSAREALE LSSQQEYLKL KARYEALQRN QRNLLGEDLG PLSSKELESL 120 ERQLDMSLKQ IRSTRTQCML DQLTDLQRKE HMLNEANKTL KQRLFEGYHV NSLQMNPNAD 180 EYGRQQAQAH GDGFFHPLDC EPTLQIGYQN DPISVVTAGP SLSNYMAGWL P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-115	MIKC_MADS family protein