PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g820060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 466aa MW: 53322.5 Da PI: 10.5229

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g820060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.7	8.4e-20	1	69	17	87
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r+++ k+plW+evs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdqlea Pd.00g820060.m01 1 MDVAFRDASVKGPLWDEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLEA 69 5678999********************************************975544..6*****85 PP
2	trihelix	105.4	4.2e-33	293	377	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+ Pd.00g820060.m01 293 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLD 377 8******************************************************************97.99********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MDVAFRDASV KGPLWDEVSR KLAALGYHRS AKKCKEKFEN VYKYHRRTKE GRTGKSEGKT 60 YRFFDQLEAL ENQPQTPGTT HHHQAKPHHQ STMAAVAATM ATMASTIPSS AAPHPIISNV 120 SSQAIAAPTL NLAAPNSFPP TNPIRLMKEV IQKQEDLQKR FLEAIEKREH EKMVREEAWR 180 MQEMARVNRE REILAQERSI AAAKDAAVMS FLQKISEQQK NPNQTPPPGQ SQINNNLLQL 240 QPTQLVPPPP RQPAPPQQPQ PQPQQPVTNF ELVPKPNNNG ENNNLSSPAS SSRWPKVEVQ 300 ALIKLRTSLD SKYQENGPKG PLWEEISGAM RKLGYNRSSK RCKEKWENIN KYFKKVKESN 360 KRRPEDSKTC PYFHQLDSLY RERNKFDHNN VNPKPENSVP LMWQTSQLQW VQPQLSELRK 420 RPRWIERKKV GLNVGQVLQG FRTGHEEEIK GSSTSSSRKQ IIDIVN

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MDVAFRDASV KGPLWDEVSR KLAALGYHRS AKKCKEKFEN VYKYHRRTKE GRTGKSEGKT  60
YRFFDQLEAL ENQPQTPGTT HHHQAKPHHQ STMAAVAATM ATMASTIPSS AAPHPIISNV  120
SSQAIAAPTL NLAAPNSFPP TNPIRLMKEV IQKQEDLQKR FLEAIEKREH EKMVREEAWR  180
MQEMARVNRE REILAQERSI AAAKDAAVMS FLQKISEQQK NPNQTPPPGQ SQINNNLLQL  240
QPTQLVPPPP RQPAPPQQPQ PQPQQPVTNF ELVPKPNNNG ENNNLSSPAS SSRWPKVEVQ  300
ALIKLRTSLD SKYQENGPKG PLWEEISGAM RKLGYNRSSK RCKEKWENIN KYFKKVKESN  360
KRRPEDSKTC PYFHQLDSLY RERNKFDHNN VNPKPENSVP LMWQTSQLQW VQPQLSELRK  420
RPRWIERKKV GLNVGQVLQG FRTGHEEEIK GSSTSSSRKQ IIDIVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-96	Trihelix family protein