PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g821980.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 29996.2 Da    PI: 5.3099
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g821980.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.41.9e-235699851
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rqvtfskRr gilKKA ELSvLC+ +vav+ifs tgkl++yss
  Pd.00g821980.m01 56 ARQVTFSKRRRGILKKAAELSVLCESKVAVVIFSATGKLFDYSS 99
                      69****************************************96 PP
2K-box40.71e-141362092497
             K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       L ke+e+  +++R+++ edLe+L++ eLq+Leq ++ sl+++ ++K+el +++i  l +k  el e+n++Lr+ 
  Pd.00g821980.m01 136 LSKELEEKSHQLRQMKAEDLEDLDFDELQKLEQLVDASLSRVIETKEELRMTEITALERKGAELVEANNQLRQT 209
                       667777777999************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MIRQAGPLAA AAISLSHSLS FSGHTKTSDL KLPNEGGILK MMRKKIKIKK IDCLPARQVT  60
FSKRRRGILK KAAELSVLCE SKVAVVIFSA TGKLFDYSSS SIKDVIESYK AHKNGVEKSD  120
EPSVELQLEN ENRIGLSKEL EEKSHQLRQM KAEDLEDLDF DELQKLEQLV DASLSRVIET  180
KEELRMTEIT ALERKGAELV EANNQLRQTM VMLSGGNTGP TLKDPESLSD KTGGGGEEEG  240
MSSESAISTT CNSALSLSLG DDSDDVTLSL KLGLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-46MIKC_MADS family protein