PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g822040.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 450aa MW: 50726.6 Da PI: 4.9423

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g822040.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.7	3.6e-24	262	305	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g822040.m01 262 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 305 69****************************************96 PP
2	K-box	46.3	1.9e-16	24	108	13	97
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +s ++++ +L ke+e+ +++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+e ++++i l +k el ++nk+Lr++ Pd.00g822040.m01 24 ELQSENENHIRLSKELEEKSHQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDERIMSEIMALERKRAELVKANKQLRQR 108 5788899999*************************************************************************97 PP
3	K-box	49	2.6e-17	337	415	19	97
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i l kk el e+n++Lr++ Pd.00g822040.m01 337 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKEELIMSEIMALEKKGAELVEANNQLRQR 415 34457888888888***************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MKDVIERYQA HINGGEKFDE PSIELQSENE NHIRLSKELE EKSHQLRQMK GEDLEELNFD 60 ELQKLEQLVD ASLGRVIETK DERIMSEIMA LERKRAELVK ANKQLRQRQM LSRGNIGPAL 120 MEPERLNNNI GGGGEEEGMS SESATSTTCN SAPSLSLEDD SDDVTLSLKL GNFQLQDLNT 180 KGAIENIQGG NASIISLIKK WRVVNVCKIN KENRGEAAIF LSHSLSFSEN TRTSDPGTPQ 240 KVGMVKTMRK KIKIKKIDYL PARQVTFSKR RRGIFKKAEE LSVLCESEVA VVIFSATGKL 300 FDYSSSSTKD VVERYKAHTN GVEKSDELSV ELQLEIENHI RLTKELEEKS RQLRQMRGED 360 LEELNIDELQ KLEQLVDASL GRVIETKEEL IMSEIMALEK KGAELVEANN QLRQRMLSRG 420 NIGPALMEPE SLSLEDDCSD VTLALKLGLP

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MKDVIERYQA HINGGEKFDE PSIELQSENE NHIRLSKELE EKSHQLRQMK GEDLEELNFD  60
ELQKLEQLVD ASLGRVIETK DERIMSEIMA LERKRAELVK ANKQLRQRQM LSRGNIGPAL  120
MEPERLNNNI GGGGEEEGMS SESATSTTCN SAPSLSLEDD SDDVTLSLKL GNFQLQDLNT  180
KGAIENIQGG NASIISLIKK WRVVNVCKIN KENRGEAAIF LSHSLSFSEN TRTSDPGTPQ  240
KVGMVKTMRK KIKIKKIDYL PARQVTFSKR RRGIFKKAEE LSVLCESEVA VVIFSATGKL  300
FDYSSSSTKD VVERYKAHTN GVEKSDELSV ELQLEIENHI RLTKELEEKS RQLRQMRGED  360
LEELNIDELQ KLEQLVDASL GRVIETKEEL IMSEIMALEK KGAELVEANN QLRQRMLSRG  420
NIGPALMEPE SLSLEDDCSD VTLALKLGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	5e-58	MIKC_MADS family protein