PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g826830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29824.1 Da    PI: 7.1991
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g826830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-184395456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      + +++ eq+++Le+ Fe+ +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Pd.00g826830.m01 43 KKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 95
                      4568889*********************************************9 PP
2HD-ZIP_I/II1309.6e-4241131191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       ekk+rl+ eqvk+LE+sFe+ +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n+ L++++++L++el
  Pd.00g826830.m01  41 EKKKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKKFDALKADNDVLQDHNNKLQAEL 131
                       69**************************************************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MMKRSLSFSG VENNKCHHHE EVGLHGGGED DLSDDGSQIG EKKKRLNLEQ VKTLEKSFEM  60
GNKLEPERKM QLAKALGLQP RQIAIWFQNR RARWKTKQLE KDYDVLKKKF DALKADNDVL  120
QDHNNKLQAE LLSMKSKDSN EAGLNNINNL KKETDQGSWS NGSENSSDHH HHHLNLDISR  180
TPATTNSSPS NSQQTNGKNL FPSSLRPTSI TQLLQGSSRS DLQCLKVDQM IQDESLCSMF  240
NGIDQEQQQG YWPWPEQHHF H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-66HD-ZIP family protein