PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g827040.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 398aa MW: 45032.8 Da PI: 8.1563

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g827040.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.8	3.6e-15	70	129	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Pd.00g827040.m01 70 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 129 789****************888855555447***********************98 PP
2	AP2	52.3	1.4e-16	172	223	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Pd.00g827040.m01 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 223 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MELMMVKNEE NPGRRRQSTA DRETEATRSV KRRRRDPPAV AVSCDNKQSE QQLPQKPADP 60 TSATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNVTQKK KGKQVYLGAY DEEESAARAY 120 DLAALKYWGT STFTNFPISD YEKETEIMQT VSKEEYLASL RRKSSGFSRG VSKYRGVARH 180 HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK 240 PTADDPIATQ EPETVAEPQN MPFMANSYIS PAESFSHTNP FASDYFTSPR KQEIIGSKSS 300 SPTALGLLLQ SSIFRELVQK NSNFSEDEST DGEETKKQPQ VGSDDEFGGI FYDGIGNYPF 360 ACSSNSDGDN NPWSNITSTI LLNQPTKANA SDSLFFFS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MELMMVKNEE NPGRRRQSTA DRETEATRSV KRRRRDPPAV AVSCDNKQSE QQLPQKPADP  60
TSATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNVTQKK KGKQVYLGAY DEEESAARAY  120
DLAALKYWGT STFTNFPISD YEKETEIMQT VSKEEYLASL RRKSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK  240
PTADDPIATQ EPETVAEPQN MPFMANSYIS PAESFSHTNP FASDYFTSPR KQEIIGSKSS  300
SPTALGLLLQ SSIFRELVQK NSNFSEDEST DGEETKKQPQ VGSDDEFGGI FYDGIGNYPF  360
ACSSNSDGDN NPWSNITSTI LLNQPTKANA SDSLFFFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	35	RRRQSTADRETEATRSVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-95	AP2 family protein