PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g835130.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 539aa MW: 59827.6 Da PI: 6.9919

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g835130.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	7e-17	177	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pd.00g835130.m01 177 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 226 78*****************......55**********************997 PP
2	AP2	41.8	2.6e-13	269	319	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g Pd.00g835130.m01 269 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 319 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MWDLNDSPDQ RPRGDESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVV EDDGSDEEEN 60 DDGPAKLAKT RGGGGGKIFG FSMTHEESMD SDPPVTVTRQ FFPVELDSTS EIMGPTRGSV 120 PPPAPPSSSL SSFPRAHWVG VNFGQSDSGS PGKPPAAVEA AHQPMKKSRR GPRSRSSQYR 180 GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFSIEDYEE 240 DLKQMTNLTK EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF 300 DTEIDAARAY DKAAIKCNGK EAVTNFDPSI YENELNPSSE HNLDLSLGNS NSKKNNHAFG 360 SSDHGQNAAV EVQHSASMQL EADWRNQGFR QKLNLQRDRS REESDAHRRD GYLETEAMQL 420 LLRTNLHSPA PTEMHKYGQF SRRPNVGDTQ MPHTFPPHFN SPNNYHHFQF PSSSEGGRIG 480 SDLSLSMSDH PHQQQWQSGM PTSDIFATAA ASSGFPPQIR PSSQNCWLQK SGFHSLTRR

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MWDLNDSPDQ RPRGDESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVV EDDGSDEEEN  60
DDGPAKLAKT RGGGGGKIFG FSMTHEESMD SDPPVTVTRQ FFPVELDSTS EIMGPTRGSV  120
PPPAPPSSSL SSFPRAHWVG VNFGQSDSGS PGKPPAAVEA AHQPMKKSRR GPRSRSSQYR  180
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFSIEDYEE  240
DLKQMTNLTK EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF  300
DTEIDAARAY DKAAIKCNGK EAVTNFDPSI YENELNPSSE HNLDLSLGNS NSKKNNHAFG  360
SSDHGQNAAV EVQHSASMQL EADWRNQGFR QKLNLQRDRS REESDAHRRD GYLETEAMQL  420
LLRTNLHSPA PTEMHKYGQF SRRPNVGDTQ MPHTFPPHFN SPNNYHHFQF PSSSEGGRIG  480
SDLSLSMSDH PHQQQWQSGM PTSDIFATAA ASSGFPPQIR PSSQNCWLQK SGFHSLTRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-108	AP2 family protein