PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g835130.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 547aa MW: 60569.4 Da PI: 6.892

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g835130.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.2	7.2e-17	177	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pd.00g835130.m02 177 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 226 78*****************......55**********************997 PP
2	AP2	41.8	2.6e-13	269	319	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g Pd.00g835130.m02 269 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 319 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MWDLNDSPDQ RPRGDESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVV EDDGSDEEEN 60 DDGPAKLAKT RGGGGGKIFG FSMTHEESMD SDPPVTVTRQ FFPVELDSTS EIMGPTRGSV 120 PPPAPPSSSL SSFPRAHWVG VNFGQSDSGS PGKPPAAVEA AHQPMKKSRR GPRSRSSQYR 180 GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFSIEDYEE 240 DLKQMTNLTK EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF 300 DTEIDAARAY DKAAIKCNGK EAVTNFDPSI YENELNPSSE SSGVNPAEHN LDLSLGNSNS 360 KKNNHAFGSS DHGQNAAVEV QHSASMQLEA DWRNQGFRQK LNLQRDRSRE ESDAHRRDGY 420 LETEAMQLLL RTNLHSPAPT EMHKYGQFSR RPNVGDTQMP HTFPPHFNSP NNYHHFQFPS 480 SSEGGRIGSD LSLSMSDHPH QQQWQSGMPT SDIFATAAAS SGFPPQIRPS SQNCWLQKSG 540 FHSLTRR

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MWDLNDSPDQ RPRGDESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVV EDDGSDEEEN  60
DDGPAKLAKT RGGGGGKIFG FSMTHEESMD SDPPVTVTRQ FFPVELDSTS EIMGPTRGSV  120
PPPAPPSSSL SSFPRAHWVG VNFGQSDSGS PGKPPAAVEA AHQPMKKSRR GPRSRSSQYR  180
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFSIEDYEE  240
DLKQMTNLTK EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF  300
DTEIDAARAY DKAAIKCNGK EAVTNFDPSI YENELNPSSE SSGVNPAEHN LDLSLGNSNS  360
KKNNHAFGSS DHGQNAAVEV QHSASMQLEA DWRNQGFRQK LNLQRDRSRE ESDAHRRDGY  420
LETEAMQLLL RTNLHSPAPT EMHKYGQFSR RPNVGDTQMP HTFPPHFNSP NNYHHFQFPS  480
SSEGGRIGSD LSLSMSDHPH QQQWQSGMPT SDIFATAAAS SGFPPQIRPS SQNCWLQKSG  540
FHSLTRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-110	AP2 family protein