PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g835700.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 747aa MW: 82569.4 Da PI: 8.9051

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g835700.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g835700.m01 69 FVCEICNKGFQRDQNLQLHRRGH 91 89******************988 PP
2	zf-C2H2	11.5	0.00094	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g835700.m01 145 WKCDKCSKKYAVQSDWKAHSKTC 167 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MMSGDGFSII PSAIDGFAQE HQLNANPSSQ KPNPNNPVAK KKRNLPGTPD PDAEVVALSP 60 TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR LNKEVKKKVY ICPEKSCVHH 120 DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF 180 SRKDSFITHR AFCDALTEES ARLTTSVAGA ATNLNFGNET MLNNTMMHNG HAVQDDVSQI 240 SQYGQGLIRQ DFNGLDHHHQ QHEKPSLSLW LNQQQANSNS HQLNLMDNMA ANPNQLYVTS 300 SSSTAFPDMA QMPSANNLNQ LFGSPNAMST FGSSNINLFG SGSASSSTST SAANNLSLSS 360 PIQEGGIHKG NSNLVGSGGL SKPPAAPIYE ESEKSYKKFL ELKPRESVAE KELSQLIQSQ 420 NALETALTLS ESGDYAKSLE YVEKVVLVFS PACSKAKLLK VRLLLATKDY SGVIAEAGYI 480 LKEDEDNLEA LLLRGRAYYY LADHDVAQRH YQKGLRLDPE HGELKKAYFG LKNLLKKTKS 540 AEDNVNKGKL RLAVEEFKAA LALDPNHLAH NVHLHLGLCK ALVKLGRGKD ALSSCNEALK 600 IDEELLEALV QRGEAKLLTE DWEGAVEDLK SAAQRSPQDM NIREALMKAE KALKMSKRKD 660 WYKILGVSKT ASISEIKKAY KKLALQWHPD KNVENRQEAE DKFREIAAAY EVLGDEDKRT 720 KYDRGGFPGG GGGGFGGGFP GGFDFQF

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MMSGDGFSII PSAIDGFAQE HQLNANPSSQ KPNPNNPVAK KKRNLPGTPD PDAEVVALSP  60
TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR LNKEVKKKVY ICPEKSCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALTEES ARLTTSVAGA ATNLNFGNET MLNNTMMHNG HAVQDDVSQI  240
SQYGQGLIRQ DFNGLDHHHQ QHEKPSLSLW LNQQQANSNS HQLNLMDNMA ANPNQLYVTS  300
SSSTAFPDMA QMPSANNLNQ LFGSPNAMST FGSSNINLFG SGSASSSTST SAANNLSLSS  360
PIQEGGIHKG NSNLVGSGGL SKPPAAPIYE ESEKSYKKFL ELKPRESVAE KELSQLIQSQ  420
NALETALTLS ESGDYAKSLE YVEKVVLVFS PACSKAKLLK VRLLLATKDY SGVIAEAGYI  480
LKEDEDNLEA LLLRGRAYYY LADHDVAQRH YQKGLRLDPE HGELKKAYFG LKNLLKKTKS  540
AEDNVNKGKL RLAVEEFKAA LALDPNHLAH NVHLHLGLCK ALVKLGRGKD ALSSCNEALK  600
IDEELLEALV QRGEAKLLTE DWEGAVEDLK SAAQRSPQDM NIREALMKAE KALKMSKRKD  660
WYKILGVSKT ASISEIKKAY KKLALQWHPD KNVENRQEAE DKFREIAAAY EVLGDEDKRT  720
KYDRGGFPGG GGGGFGGGFP GGFDFQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-101	C2H2 family protein