PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g853850.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 540aa MW: 58691.6 Da PI: 5.5153

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g853850.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	355	397	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L Pd.00g853850.m01 355 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 397 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MLPRLNGAVW MGDREDRDSA SWNRTTAATT NNSNCGVVES KDELGSLSTF KSMLDVDDWY 60 LPNNSIQSHS DVRDIAFSPS FADPESLLLN PVDSSSSCSP SSSVFNNLDP NQVHYYLPQN 120 STLSSLLNVV PNNPLEHGFD LGCDIGFLDT QASSGSSLMN RGGGVLTGFS GLSSNNQMNA 180 QDLCSNLQFS TTRLPQLLEN SSNFSGFRGF EDTSANALFP NRPKLLRPLD SVPDVGAPPT 240 LFQKRVQKNL ADNGGNLGVL GSEGGLVLNH MEGGERKREM GEENERKRKL SGGDDFEDVS 300 IDGSGLNYDS DDFTENTKMD DGAKNGGNSS NANSTVTGGG DHKGKKKGLP AKNLMAERRR 360 RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQK INNLHNELES IPPGSSLTPT 420 GSTFHPLTPT PATLPSRIKE ELCPSSLPSP NGQPARVEVR LREGRAVNIH MFCGRRPGLL 480 LSTMRTLDSL GLDIQQAVIS CFNGFAMDVF RAEQCKEGQD VHPDQIKAVL LESVGFHGLI

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MLPRLNGAVW MGDREDRDSA SWNRTTAATT NNSNCGVVES KDELGSLSTF KSMLDVDDWY  60
LPNNSIQSHS DVRDIAFSPS FADPESLLLN PVDSSSSCSP SSSVFNNLDP NQVHYYLPQN  120
STLSSLLNVV PNNPLEHGFD LGCDIGFLDT QASSGSSLMN RGGGVLTGFS GLSSNNQMNA  180
QDLCSNLQFS TTRLPQLLEN SSNFSGFRGF EDTSANALFP NRPKLLRPLD SVPDVGAPPT  240
LFQKRVQKNL ADNGGNLGVL GSEGGLVLNH MEGGERKREM GEENERKRKL SGGDDFEDVS  300
IDGSGLNYDS DDFTENTKMD DGAKNGGNSS NANSTVTGGG DHKGKKKGLP AKNLMAERRR  360
RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQK INNLHNELES IPPGSSLTPT  420
GSTFHPLTPT PATLPSRIKE ELCPSSLPSP NGQPARVEVR LREGRAVNIH MFCGRRPGLL  480
LSTMRTLDSL GLDIQQAVIS CFNGFAMDVF RAEQCKEGQD VHPDQIKAVL LESVGFHGLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	363	KKKGLPAKNLMAERRRRKK
2	357	364	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-129	bHLH family protein