PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g855980.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 255aa    MW: 27557.8 Da    PI: 9.5396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g855980.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05228251123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       + C+ C++sF++   L++H +  H
  Pd.00g855980.m01 228 FNCQSCNRSFNSDGALQSHTKAkH 251
                       78*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MEFWGVEVKS GQSVSVEPKN KVVHLSQVCL DDVKKAKGSN PISLFVKTGN HKLVLGILSA  60
EKFPQLPLDI FFGEKFELSH NWKNGSVHFI GYKSLSNTGD NSDSEEDVAL TVVDNGKPVI  120
SGKPKVSTED AKKAIKSEQK EISSDDDESD DEEVGADQTK ADVSKKRPAE SAKRLANNKK  180
AKFVTPEKTD SKKGSVHIAT PYPAKQAGKK PATSDQSKQQ APKSGGTFNC QSCNRSFNSD  240
GALQSHTKAK HSAAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.16e-39C2H2 family protein