PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g855980.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 249aa    MW: 26976.1 Da    PI: 9.3488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g855980.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05222245123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       + C+ C++sF++   L++H +  H
  Pd.00g855980.m02 222 FNCQSCNRSFNSDGALQSHTKAkH 245
                       78*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEFWGVEVKS GQSVSVEPKN KVVHLSQVCL DDVKKAKGSN PISLFVKTGN HKLVLGILSA  60
EKFPQLPLDI FFGEKFELSH NWKNGSVHFI GYKSLSNTGD NSDSEEDVAL TVVDNGKPKV  120
STEDAKKAIK SEQKEISSDD DESDDEEVGA DQTKADVSKK RPAESAKRLA NNKKAKFVTP  180
EKTDSKKGSV HIATPYPAKQ AGKKPATSDQ SKQQAPKSGG TFNCQSCNRS FNSDGALQSH  240
TKAKHSAAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.11e-38C2H2 family protein