PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g861990.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 637aa MW: 66859 Da PI: 8.1365

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g861990.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g861990.m01 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	10.8	0.0015	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Pd.00g861990.m01 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MPTDVDNSST ASGEASVSSS GNQTAPPKPT TKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARGHTQTP TQTQTEVNLN SESDPKAQSA NSPPQPTPQP PVPSQATTSS 240 VPSQSAGLLS SPLPSTQNPV TELPENPTQT MEEAPAVTGP KGNCSSSNSS SSNGSTSSSV 300 FASLFASSTA SASLQPLQPP AFTDLVRAMG NPDSTTDLAP SSSVEPISLG LSTSHGSSLF 360 GPAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL RGFGIMSSSS SSAQQESLQW 420 SQRQAEPDSA SVAAGLGLAL PCDGGSGWKE LMMGSPSMFG PKQTTLDLLG LGMAAGNSPS 480 GGLSALITSI GGGLDVAAAA ASFGGGEYSG CLIVCKSVND WVVGGCDLEE VPILETLESS 540 LVLGRDSIAG LISKTRARRR GAAEAEKSKT ESDEFLDRVQ LAIRPNFLAR ENGAKRALSG 600 RLEVVVGVVA LSGEPYPSGL KGTPSTSKPL TMAEGFE

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MPTDVDNSST ASGEASVSSS GNQTAPPKPT TKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARGHTQTP TQTQTEVNLN SESDPKAQSA NSPPQPTPQP PVPSQATTSS  240
VPSQSAGLLS SPLPSTQNPV TELPENPTQT MEEAPAVTGP KGNCSSSNSS SSNGSTSSSV  300
FASLFASSTA SASLQPLQPP AFTDLVRAMG NPDSTTDLAP SSSVEPISLG LSTSHGSSLF  360
GPAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL RGFGIMSSSS SSAQQESLQW  420
SQRQAEPDSA SVAAGLGLAL PCDGGSGWKE LMMGSPSMFG PKQTTLDLLG LGMAAGNSPS  480
GGLSALITSI GGGLDVAAAA ASFGGGEYSG CLIVCKSVND WVVGGCDLEE VPILETLESS  540
LVLGRDSIAG LISKTRARRR GAAEAEKSKT ESDEFLDRVQ LAIRPNFLAR ENGAKRALSG  600
RLEVVVGVVA LSGEPYPSGL KGTPSTSKPL TMAEGFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-108	C2H2 family protein