PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g864660.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 290aa MW: 31950.7 Da PI: 6.6899

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g864660.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.4	1.2e-08	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f t Ck+G rCkF+H++ Pd.00g864660.m01 54 PGEPDCPYFINTQRCKFGMRCKFNHPK 80 5789*********************96 PP
2	zf-CCCH	37.1	5.2e-12	103	127	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ Pd.00g864660.m01 103 EPPCAFYLKMGQCKFGATCKFHHPK 127 79*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MAPAQSAAAD AAATAGLSRV YTSPFPISSP AFPASNAPLK VPLFAPSEFL SERPGEPDCP 60 YFINTQRCKF GMRCKFNHPK DKLAAAVASE NSDVFALPER PSEPPCAFYL KMGQCKFGAT 120 CKFHHPKDIQ IPSAEQENKI GEIGTTIQLE GTGFAVKPPA LSFNSKELPV RLGEPDCPFY 180 LKTGSCKKVH TKFTEAWQGW EDYKPLHERI KEADCVMEGL DKAINILNSV VPVKTCSCTC 240 KLQSLRNADE GLLVHLQSLL NIEQEIQKAE EFNLPHNHVL FACQILIDNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-52	C3H family protein