PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g870880.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 295aa    MW: 32954.6 Da    PI: 4.005
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g870880.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.42.7e-12811681197
             NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                       e++++  + e+P +r+k+i+k d  ++++ +ea  l+s + +lf+  l+ rs   a e+kr+ +k   +  av+r   + dfl+d+ p
  Pd.00g870880.m01  81 EENAKPIRPEFPNTRVKRIMKLDSCINKVNSEALLLVSCSAQLFLEFLAERSAEVATEKKRKIVKLEHMRVAVKRHRpTSDFLLDELP 168
                       4444445779***************************************************************9975389*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MAEEQNAARE EDNIAGEENA EQEEENAEQE EENAEHEEEN AEQAEENAEQ EEDDAEQEED  60
NPENAVENAA VKEKAKVAQE EENAKPIRPE FPNTRVKRIM KLDSCINKVN SEALLLVSCS  120
AQLFLEFLAE RSAEVATEKK RKIVKLEHMR VAVKRHRPTS DFLLDELPVP SQPSDHQPTD  180
RSSSLTVSHA PAPARRDRSR SRAVSDKPAP AGTRRIDHFF LTKEIPIQTE QSLIETEEAS  240
IEIDEAPIET DEGPIETDEA SIETDEASIE IDEAPIVTDE GPIETGEGPI ETNES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-41NF-YC family protein