PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g878390.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26401 Da    PI: 5.0243
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g878390.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i+n   rqvtfskRr gi+KKA ELSvLC+ evav+ifs tgkl++yss
  Pd.00g878390.m01  9 KKIDNLPARQVTFSKRRRGIFKKAAELSVLCESEVAVVIFSATGKLFDYSS 59
                      689999*******************************************96 PP
2K-box48.73.2e-17871701598
             K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +  ++++ +L ke+e+  r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+e ++++i  l +k  el ++nk+Lr++ 
  Pd.00g878390.m01  87 QPENENHIRLSKELEEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDERIMSEIMALERKRAELVKANKQLRQRQ 170
                       55677888999*****9****************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MMREKIKIKK IDNLPARQVT FSKRRRGIFK KAAELSVLCE SEVAVVIFSA TGKLFDYSSS  60
SMKDVIERYQ AHINGGEKFD EPSIELQPEN ENHIRLSKEL EEKSRQLRQM KGEDLEELNF  120
DELQKLEQLV DASLGRVIET KDERIMSEIM ALERKRAELV KANKQLRQRQ MLSRGNIGPA  180
LMEPERLNNN IGGGGEEEGM SSESATSTTC NSAPSLSLED DSDDVTLSLK LGLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.14e-69MIKC_MADS family protein