PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g878450.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 295aa    MW: 32994.6 Da    PI: 6.2743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g878450.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.12.3e-2365108851
                       HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        rqvtfskRr g+lKKA ELSvLC+ evav+ifs tgkl+ yss
  Pd.00g878450.m01  65 ARQVTFSKRRRGLLKKAAELSVLCESEVAVVIFSATGKLFHYSS 108
                       69****************************************96 PP
2K-box47.39.1e-171322181197
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         + +  ++++ kL ke+e+  r++R+++GedL++L+l eL +Leq +e sl ++ ++K+el++++i el +k  el e+n++Lr+ 
  Pd.00g878450.m01 132 VIELQLENENHIKLSKELEEKSRQLRQMKGEDLQRLNLDELLKLEQLVEASLGRVMETKEELIKTEIMELERKGAELVEANNQLRQT 218
                       4455666788899************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MPHFLTSHIN GGDCIHPSVP VDLLINLPGS SSSHFSVSFR TQTPKPPTKM MRNKIKIKKI  60
DYLPARQVTF SKRRRGLLKK AAELSVLCES EVAVVIFSAT GKLFHYSSSS TKDVIERYNA  120
DMNGVEKSNN QVIELQLENE NHIKLSKELE EKSRQLRQMK GEDLQRLNLD ELLKLEQLVE  180
ASLGRVMETK EELIKTEIME LERKGAELVE ANNQLRQTMV MLSRGNTGPA LMDQERLNNN  240
IEGGGEEEGM SAESAISTTC NSAVSLSLED DSSDEVTLSL KLGKLQLRNP NTERG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-44MIKC_MADS family protein