PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g887490.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 727aa MW: 79816.9 Da PI: 6.8416

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g887490.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	700	723	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C++sF++ L++H + H Pd.00g887490.m01 700 FNCQSCNRSFNSDGALQSHTKAkH 723 78*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MLVESKDQRF FRQYKGDSYQ VWVEKLNNGK GPHMRLTKCI HGVVRSVVIP QGRNNIGWVL 60 MKENLEVILT GRINPNRATS SAQVDCTTLS GRGRVEGKTY KEAVESENRP ETKVSKNFTW 120 GGKSNWSWVV VCERQVLHQL WSDIRRTLTS WLDKEVELFP YQINRAFFVC DSKMEAMRTS 180 NFGKLGVKGQ TDVLLYSWDS GLKNNTPKIR TENFKYLFEA RIRTRKNNVG FLPEIVITNE 240 GAESYFVKIR PISPAIKPRN SWLPLSKEVG SRKSTEPCAG DGAVRLSNSG DGSPTHVEGD 300 MNSLIGKRDI EGCEKEHSRM MAKTLECGSG SGIWGTGRIS DLQIPQLVPI SEQSQSPENP 360 VRCSARKAVN SSSIRAINSG PNIGPILETT SEPKPANPSF YYHGPGVETT SEPKLANPPL 420 YYHGPGDIGE PLTNLQGAGK WAGPNKLKTR FLSKFSSLSG RRRKLPMGQS LSFTQNSQSG 480 YGGEFATVAE ARKGAESCDS VDGRSIASAA TEEDDLPSEV EESLDVIECD DGFVARMMAG 540 QIEGFVETRG KPVISGKPNV STEDAKKAIK SEQKETSSDD DESDDEEVGA DQTKVKIEEG 600 SSDDDDDDDA DSEDETDDSE EEDEDTLKKA DVSKKRPAES AESAKRLANN KKAKFVTPEK 660 TDSKKGSVHI ATPYPAKQAG KKPATSDQSK QQAPKSGGTF NCQSCNRSFN SDGALQSHTK 720 AKHSAAK

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MLVESKDQRF FRQYKGDSYQ VWVEKLNNGK GPHMRLTKCI HGVVRSVVIP QGRNNIGWVL  60
MKENLEVILT GRINPNRATS SAQVDCTTLS GRGRVEGKTY KEAVESENRP ETKVSKNFTW  120
GGKSNWSWVV VCERQVLHQL WSDIRRTLTS WLDKEVELFP YQINRAFFVC DSKMEAMRTS  180
NFGKLGVKGQ TDVLLYSWDS GLKNNTPKIR TENFKYLFEA RIRTRKNNVG FLPEIVITNE  240
GAESYFVKIR PISPAIKPRN SWLPLSKEVG SRKSTEPCAG DGAVRLSNSG DGSPTHVEGD  300
MNSLIGKRDI EGCEKEHSRM MAKTLECGSG SGIWGTGRIS DLQIPQLVPI SEQSQSPENP  360
VRCSARKAVN SSSIRAINSG PNIGPILETT SEPKPANPSF YYHGPGVETT SEPKLANPPL  420
YYHGPGDIGE PLTNLQGAGK WAGPNKLKTR FLSKFSSLSG RRRKLPMGQS LSFTQNSQSG  480
YGGEFATVAE ARKGAESCDS VDGRSIASAA TEEDDLPSEV EESLDVIECD DGFVARMMAG  540
QIEGFVETRG KPVISGKPNV STEDAKKAIK SEQKETSSDD DESDDEEVGA DQTKVKIEEG  600
SSDDDDDDDA DSEDETDDSE EEDEDTLKKA DVSKKRPAES AESAKRLANN KKAKFVTPEK  660
TDSKKGSVHI ATPYPAKQAG KKPATSDQSK QQAPKSGGTF NCQSCNRSFN SDGALQSHTK  720
AKHSAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	1e-26	C2H2 family protein