PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g888200.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 217aa    MW: 24294.1 Da    PI: 5.2779
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g888200.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601002.3e-3181091101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+l+++C+++C++apyf +e+   +f  +h +FGa+++++++++lp +er  a  ++++eA+ara dP yG+v+ il+lq+q+ + +a
  Pd.00g888200.m01   8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNIFGANKMSRIISKLPMTERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQA 100
                       7*********************999856***************************************************************** PP

            DUF260  93 elallkeel 101
                       +l++++e+l
  Pd.00g888200.m01 101 QLDEAHEQL 109
                       ****99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNIFGANKM SRIISKLPMT  60
ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RTVAPVANPN  120
QDLENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVTGCYKNTV  180
NIPTENVADG WVNNEASWLV KVPEYGQSPS IDSKHTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.13e-42LBD family protein