PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g889490.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 113aa    MW: 13131.6 Da    PI: 10.724
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g889490.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.9e-191353343
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      i+++  r+vtf kR+ng++KKA+EL +LCd++v+ i++ ++
  Pd.00g889490.m01 13 IQDDKARKVTFRKRKNGLFKKAFELTTLCDVKVCTIVYEKK 53
                      8999*********************************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MGRRKTKLAL ELIQDDKARK VTFRKRKNGL FKKAFELTTL CDVKVCTIVY EKKSEGKLAP  60
PQTFPAKFEE VKEIIDKYKS NSSKIKKVQN LADFYATQTM QVKKEIVKLR TKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-17M-type_MADS family protein