PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g894460.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 234aa    MW: 26133.7 Da    PI: 7.6094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g894460.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-0791115526
                       --SGGGGTS...--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                       +C+  a+ G    C+y d+C+F+H+
  Pd.00g894460.m01  91 ICPEVAKRGdvsRCPYSDKCRFSHD 115
                       699999999999************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MDESPAETAP VPEVSNGWAD RTPEELVAKS IAPVKKQFLC PPPIRACSNE QNDAVSGGKT  60
KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYSDKC RFSHDIEAYK  120
AQKPEDIEGD CPFMTAQETC PYGLACVETT RRFLLEWLSY TCRYVPVGLL EVIPQRLSWR  180
PPSYFGRDDL ETLMASDSAA DWVRISEMLL GKVPDGFTFA PKHKSNSYDR AENG