PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g894800.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1518aa MW: 165308 Da PI: 4.8232

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g894800.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.1e-06	1494	1516	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ Cr f+++G+Ck G++C + H+ Pd.00g894800.m01 1494 QRVCR-FFESGHCKKGASCDYLHP 1516 68899.8889*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1518 aa Download sequence
MEAEEEDVLK VNEPSVPVEN DAVLSPETQE ELRRTEPQCM SESLPEPELK PETEGFGLGV 60 EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVAEG HGTEDTEIVE ELSVAEGQVT 120 EETEVGAVDE EDERGLETEK VLSEEGVVAH SAKEAAEKSN VAEVAEETVI SWKDQAEEKT 180 AEVEAEEAEA EAEKVQAVGE QAEAEGERTE EEVEGDDEAN VTDMVAETDM VEESSKATGK 240 LLSKKKMEED VCFICFDGGE LVLCDRRGCP KAYHPSCVNR DEAFFRAKGR WNCGWHLCSN 300 CEKNAHYMCY TCTFSLCKGC TKDALFLCVR GNKGFCETCM KTVMLIEKNE QGNKDTNEVD 360 FDDKTSWEYL FKDYWIDLKE RLSLTVDELA QAKNPWKGAT GHKQESHDEP YDVNNDEGSE 420 SDNSENLDLA NSKKRKAKKR LRTRGKGKDS SSPATATGSG GPSADDSTGW GSKELLEFVM 480 HMRNGDKSAL SQFDVQALLL EYIKRNKLRD PRRKSQIICD IRLQNLFGKP RVGHFEMLKL 540 LESHFLVKED SQADDLQGSV VDTEGNQLEA DGNSDTPAKS SKDRRRKTRK KGDGRGPQSN 600 TDDFAAIDIH NINLIYLKRN LVEDLLDDLD NFGDKVAHSF VRIRISGSGQ KQDLYRLVQV 660 IGTCKAAEPY KVGKRMTDIL LEILNLNKTE IISIDIISNQ DFTEDECKRL RQSIKCGLIN 720 RLTVGDVQEK ALALQAVRVK DWLETEIVRL SHLRDRASEK GRRKEYPYLL IECVEKLQLL 780 KTPEERQRRL EETLEIHVDP NMDPSYESEE DEGEGDDKKQ ESYIRPTGSG FGRKGREPIS 840 PRRAGPSSND SWSGSRNFSS MNRELSRNMS NKGFFNKAEN TSAAGEIVND SWGHGRDRET 900 QQTNHWEKKQ NISSLETGVR STQSAVPSES SPAGGSENSV AHLSTGVAQS AVNESEKIWH 960 YKDPSGKVQG PFSMVQLRKW NHTGYFPANL RVWKNTEKEE DSILVTDALT VKFQKDPSFV 1020 DSSFPKAQMV HNSHLSPVHS GKSQGALFQR GTEGQAGGVS WGSQNEINSS SGRGTPQSVE 1080 VPKYSSDGWS TTNLPSPTPS QTPLGGARGQ AYESNWSPSP VHPGGSVLGG NGVLQPTAVV 1140 TPESALRASG NDRSSSLPGI NAAPKSENAT LLGSTTALRM HGQVTGSAPV LSNASMNQVA 1200 DVNNLVSNLQ NLVQSVTSRA PASDARGWGS GSVPKQEMTA SGPVPGSESQ PWGGAPSQRI 1260 EPNNAATVPA QHHTHGYWNN APSTNNAPSS MNTGNLAGNF PTSGFSGVPH SDPWRPPVPS 1320 NHTYIQPPAQ PQAPWGVGVP DNQSAVPRTG QENQNTSWVP MAGNPNVTWG GGPGPGNTNM 1380 NWGLPSQGPG WTAPSQGPVP GNAVTNWVPP GQGPPSVSAN PGWAPPGQGP TLGNANPGWS 1440 APNATQNGDR FSNQRDRGSH GDPGFGGGKP WNRQSSFGSG GGGGGSSRPP FRGQRVCRFF 1500 ESGHCKKGAS CDYLHPDH

Sequence ? help Back to Top

Protein Sequence Length: 1518 aa Download sequence

MEAEEEDVLK VNEPSVPVEN DAVLSPETQE ELRRTEPQCM SESLPEPELK PETEGFGLGV  60
EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVAEG HGTEDTEIVE ELSVAEGQVT  120
EETEVGAVDE EDERGLETEK VLSEEGVVAH SAKEAAEKSN VAEVAEETVI SWKDQAEEKT  180
AEVEAEEAEA EAEKVQAVGE QAEAEGERTE EEVEGDDEAN VTDMVAETDM VEESSKATGK  240
LLSKKKMEED VCFICFDGGE LVLCDRRGCP KAYHPSCVNR DEAFFRAKGR WNCGWHLCSN  300
CEKNAHYMCY TCTFSLCKGC TKDALFLCVR GNKGFCETCM KTVMLIEKNE QGNKDTNEVD  360
FDDKTSWEYL FKDYWIDLKE RLSLTVDELA QAKNPWKGAT GHKQESHDEP YDVNNDEGSE  420
SDNSENLDLA NSKKRKAKKR LRTRGKGKDS SSPATATGSG GPSADDSTGW GSKELLEFVM  480
HMRNGDKSAL SQFDVQALLL EYIKRNKLRD PRRKSQIICD IRLQNLFGKP RVGHFEMLKL  540
LESHFLVKED SQADDLQGSV VDTEGNQLEA DGNSDTPAKS SKDRRRKTRK KGDGRGPQSN  600
TDDFAAIDIH NINLIYLKRN LVEDLLDDLD NFGDKVAHSF VRIRISGSGQ KQDLYRLVQV  660
IGTCKAAEPY KVGKRMTDIL LEILNLNKTE IISIDIISNQ DFTEDECKRL RQSIKCGLIN  720
RLTVGDVQEK ALALQAVRVK DWLETEIVRL SHLRDRASEK GRRKEYPYLL IECVEKLQLL  780
KTPEERQRRL EETLEIHVDP NMDPSYESEE DEGEGDDKKQ ESYIRPTGSG FGRKGREPIS  840
PRRAGPSSND SWSGSRNFSS MNRELSRNMS NKGFFNKAEN TSAAGEIVND SWGHGRDRET  900
QQTNHWEKKQ NISSLETGVR STQSAVPSES SPAGGSENSV AHLSTGVAQS AVNESEKIWH  960
YKDPSGKVQG PFSMVQLRKW NHTGYFPANL RVWKNTEKEE DSILVTDALT VKFQKDPSFV  1020
DSSFPKAQMV HNSHLSPVHS GKSQGALFQR GTEGQAGGVS WGSQNEINSS SGRGTPQSVE  1080
VPKYSSDGWS TTNLPSPTPS QTPLGGARGQ AYESNWSPSP VHPGGSVLGG NGVLQPTAVV  1140
TPESALRASG NDRSSSLPGI NAAPKSENAT LLGSTTALRM HGQVTGSAPV LSNASMNQVA  1200
DVNNLVSNLQ NLVQSVTSRA PASDARGWGS GSVPKQEMTA SGPVPGSESQ PWGGAPSQRI  1260
EPNNAATVPA QHHTHGYWNN APSTNNAPSS MNTGNLAGNF PTSGFSGVPH SDPWRPPVPS  1320
NHTYIQPPAQ PQAPWGVGVP DNQSAVPRTG QENQNTSWVP MAGNPNVTWG GGPGPGNTNM  1380
NWGLPSQGPG WTAPSQGPVP GNAVTNWVPP GQGPPSVSAN PGWAPPGQGP TLGNANPGWS  1440
APNATQNGDR FSNQRDRGSH GDPGFGGGKP WNRQSSFGSG GGGGGSSRPP FRGQRVCRFF  1500
ESGHCKKGAS CDYLHPDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein