PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g897700.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1565aa MW: 170412 Da PI: 4.7093

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g897700.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	1541	1563	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ Cr f+++G+Ck G++C + H+ Pd.00g897700.m01 1541 QRVCR-FFESGHCKKGASCDYLHP 1563 68899.8889*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1565 aa Download sequence
MEAEEEDVLK VNEPSVPVQN DAVLSPETQE ELRRTEPQCM SESLPEPELK PETEGFGLGV 60 EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVTEG HGTEDTEIVE ELNVTEGHGT 120 EDTEIVEELD VAEGHGTEDT EIVEELNVAE GHGTEDTEIV EELSVAEGQV TEETEVGAVD 180 EKDERGLETE KVLSEEGIVA HSAKEAAEKS NVAEVAEETV ISWKDQAEEK TAEVEAEEAE 240 AEAEKVQAVG EQAEAEGEKT EEEVEGDDEA NVTDMVTETD MVEESSKATG KLLSKKKMEE 300 DVCFICFDGG ELVLCDRRGC PKAYHPSCVN RDEAFFRAKG RWNCGWHLCS NCEKNAHYMC 360 YTCTFSLCKG CTKDALFLCV RGNKGFCETC MKTVMLIEKN EQGNKDTNEV DFDDKTSWEY 420 LFKDYWIDLK ERLSLTVDEL AQAKNPWKGA TGHKQESHDE PYDVNNDEGS ESDNSENLDL 480 ANSKKRKAKK RLRTRGKGKD SSSPATATGS GGPSADDSTG WGSKELLEFV MHMRNGDKSA 540 LSQFDVQALL LEYIKRNKLR DPRRKSQIIC DIRLQNLFGK PRVGHFEMLK LLESHFLVKE 600 DSQADDLQGS VVDTEGNQLE ADGNSDTPAK SSKDRRRKTR KKGDGRGPQS NTDDFAAIDI 660 HNINLIYLKR NLVEDLLDDL DNFGDKVAHS FVRIRISGSG QKQDLYRLVQ VIGTCKAAEP 720 YKVGKRMTDI LLEILNLNKT EIISIDIISN QDFTEDECKR LRQSIKCGLI NRLTVGDVQE 780 KALALQAVRV KDWLETEIVR LSHLRDRASE KGRRKELREC VEKLQLLKTP EERQRRLEET 840 LEIHVDPNMD PSYESEEDEG EGDDKKHESY IRPTGSGFGR KGREPISPRR AGPSSNDSWS 900 GSRNFSSMNR ELSRNMSNKG FFNKAENTSA ASEIVNDSWG HGRDRETQQT NHWEKKQNIS 960 SLETGVRSTQ SAVPSESSPA GGSENSVAHL STGVAQSAVN ESEKIWHYKD PSGKVQGPFS 1020 MVQLRKWNHT GYFPANLRVW RNTEKEEDSI LVTDALTGKF QKDPSFVDSS FPKAQMVHNS 1080 HLSPVHSGKS QGALFQRGTE GQAGGVSWGS QNEINSSSGR GTPQSVEVPK YSSDGWSTTN 1140 LPSPTPSQTP LGGARGQAYE SNWSPSPVHP GGSVLGGNGV LQPTAVVTPE SALRASGNDR 1200 SSSLPGINAA PKSENATLLG STTALRMHGQ VTGSAPVLSN ASMNQVADVN NLVSNLQNLV 1260 QSVTSRAPAS DARGWGSGSV PKQEMTASGP VPGSESQPWG GAPSQRIEPN NAATVPAQHH 1320 THGYWNNAPS TNNAPSSMNT GNLAGNFPTS GFSGVPHSDP WRPPVPSNHT YIQPPAQPQA 1380 PWGVGVPDNQ SAVPRTGQEN QNTSWVPMAG NPNVTWGGGP VPGNTNMNWG PPSQGPGWTA 1440 PSQGPVPGNA VTNWVPPGQG PPSVSANPGW APPGQGPTLG NANPGWSAPN ATQNGDRFSN 1500 QRDRGSHGDP GFGGGKPWNR QSSFGSGGGG GGSSRPPFRG QRVCRFFESG HCKKGASCDY 1560 LHPDH

Sequence ? help Back to Top

Protein Sequence Length: 1565 aa Download sequence

MEAEEEDVLK VNEPSVPVQN DAVLSPETQE ELRRTEPQCM SESLPEPELK PETEGFGLGV  60
EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVTEG HGTEDTEIVE ELNVTEGHGT  120
EDTEIVEELD VAEGHGTEDT EIVEELNVAE GHGTEDTEIV EELSVAEGQV TEETEVGAVD  180
EKDERGLETE KVLSEEGIVA HSAKEAAEKS NVAEVAEETV ISWKDQAEEK TAEVEAEEAE  240
AEAEKVQAVG EQAEAEGEKT EEEVEGDDEA NVTDMVTETD MVEESSKATG KLLSKKKMEE  300
DVCFICFDGG ELVLCDRRGC PKAYHPSCVN RDEAFFRAKG RWNCGWHLCS NCEKNAHYMC  360
YTCTFSLCKG CTKDALFLCV RGNKGFCETC MKTVMLIEKN EQGNKDTNEV DFDDKTSWEY  420
LFKDYWIDLK ERLSLTVDEL AQAKNPWKGA TGHKQESHDE PYDVNNDEGS ESDNSENLDL  480
ANSKKRKAKK RLRTRGKGKD SSSPATATGS GGPSADDSTG WGSKELLEFV MHMRNGDKSA  540
LSQFDVQALL LEYIKRNKLR DPRRKSQIIC DIRLQNLFGK PRVGHFEMLK LLESHFLVKE  600
DSQADDLQGS VVDTEGNQLE ADGNSDTPAK SSKDRRRKTR KKGDGRGPQS NTDDFAAIDI  660
HNINLIYLKR NLVEDLLDDL DNFGDKVAHS FVRIRISGSG QKQDLYRLVQ VIGTCKAAEP  720
YKVGKRMTDI LLEILNLNKT EIISIDIISN QDFTEDECKR LRQSIKCGLI NRLTVGDVQE  780
KALALQAVRV KDWLETEIVR LSHLRDRASE KGRRKELREC VEKLQLLKTP EERQRRLEET  840
LEIHVDPNMD PSYESEEDEG EGDDKKHESY IRPTGSGFGR KGREPISPRR AGPSSNDSWS  900
GSRNFSSMNR ELSRNMSNKG FFNKAENTSA ASEIVNDSWG HGRDRETQQT NHWEKKQNIS  960
SLETGVRSTQ SAVPSESSPA GGSENSVAHL STGVAQSAVN ESEKIWHYKD PSGKVQGPFS  1020
MVQLRKWNHT GYFPANLRVW RNTEKEEDSI LVTDALTGKF QKDPSFVDSS FPKAQMVHNS  1080
HLSPVHSGKS QGALFQRGTE GQAGGVSWGS QNEINSSSGR GTPQSVEVPK YSSDGWSTTN  1140
LPSPTPSQTP LGGARGQAYE SNWSPSPVHP GGSVLGGNGV LQPTAVVTPE SALRASGNDR  1200
SSSLPGINAA PKSENATLLG STTALRMHGQ VTGSAPVLSN ASMNQVADVN NLVSNLQNLV  1260
QSVTSRAPAS DARGWGSGSV PKQEMTASGP VPGSESQPWG GAPSQRIEPN NAATVPAQHH  1320
THGYWNNAPS TNNAPSSMNT GNLAGNFPTS GFSGVPHSDP WRPPVPSNHT YIQPPAQPQA  1380
PWGVGVPDNQ SAVPRTGQEN QNTSWVPMAG NPNVTWGGGP VPGNTNMNWG PPSQGPGWTA  1440
PSQGPVPGNA VTNWVPPGQG PPSVSANPGW APPGQGPTLG NANPGWSAPN ATQNGDRFSN  1500
QRDRGSHGDP GFGGGKPWNR QSSFGSGGGG GGSSRPPFRG QRVCRFFESG HCKKGASCDY  1560
LHPDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein