PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g904320.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 193aa    MW: 22057.4 Da    PI: 8.7646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g904320.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81.1e-097296126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      +kt+lC++f   G C+yG rC+FaHg
  Pd.00g904320.m01 72 FKTRLCNNFKM-GNCHYGQRCCFAHG 96
                      79*********.*************8 PP
2zf-CCCH18.43.7e-06130150525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        Cr f+ +G C yGd+C++ H
  Pd.00g904320.m01 130 MCRLFFNGGKCTYGDKCRYPH 150
                       5*****************977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MSDSGPTCQF FAPYLESGDN GHQLKPEFPN ADKDFKDHSD IESHPFKKSK ISEVLLISTI  60
PMAQNKMLPC NFKTRLCNNF KMGNCHYGQR CCFAHGISDL RKTWRNCQGL ETEEGFKART  120
CGHRRTSNDM CRLFFNGGKC TYGDKCRYPH HVTPENIREK SAISISTTQL TLVVLVNFTA  180
KVLWVWILTL LKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-10C3H family protein