PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g904620.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 428aa MW: 48692 Da PI: 11.0353

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g904620.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	4.1e-16	307	391	4	89
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 v +++++ + g l + k ++eh ++ +++ +l+ ++gr+W v l k++++ + +++GW +Fv++n+L+ gD++vF ++++ ++ Pd.00g904620.m01 307 VVMHPSYIRAGYLHIGAKVIKEHLLN-RGHENAILRVSDGRTWPVSL--GKQGKGiVRFQTGWMKFVQDNQLEIGDVCVFVMTNDiKR 391 5678888889999********666.455689**********..777777799********************98777444 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MASSHRKSHN QPTFSTNTPH FLKIISKGTC RQSKLRIPNK FLMKYGDDLS NPVFLKLPSG 60 SEWKIELRRW EDKACSSGKS EFPAKRHCGV TSTTRRFIKR TRSAKVIALQ RAKAFKSDKP 120 SFIVPMTRSY TNRSFVWLPS DFSFHMTRLS NNSGNVTFRV LDGRTWSLGL KCERAKPKAR 180 FQAVVIFRAI EAANTLSPDF HGEQTMSEME ETDEDYDSVE LLDYFPPCPK TRKKSPIAPQ 240 PSKKNRTCSI STAENNIKSV GGPSRSQKFL KRRLQGPRRM NPVTESRTDR ALLRAKAFRS 300 EYPSSTVVMH PSYIRAGYLH IGAKVIKEHL LNRGHENAIL RVSDGRTWPV SLGKQGKGIV 360 RFQTGWMKFV QDNQLEIGDV CVFVMTNDIK RLIDVVLFRA TEATKCTLSG EGNRRPTISS 420 SRKIKREA

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MASSHRKSHN QPTFSTNTPH FLKIISKGTC RQSKLRIPNK FLMKYGDDLS NPVFLKLPSG  60
SEWKIELRRW EDKACSSGKS EFPAKRHCGV TSTTRRFIKR TRSAKVIALQ RAKAFKSDKP  120
SFIVPMTRSY TNRSFVWLPS DFSFHMTRLS NNSGNVTFRV LDGRTWSLGL KCERAKPKAR  180
FQAVVIFRAI EAANTLSPDF HGEQTMSEME ETDEDYDSVE LLDYFPPCPK TRKKSPIAPQ  240
PSKKNRTCSI STAENNIKSV GGPSRSQKFL KRRLQGPRRM NPVTESRTDR ALLRAKAFRS  300
EYPSSTVVMH PSYIRAGYLH IGAKVIKEHL LNRGHENAIL RVSDGRTWPV SLGKQGKGIV  360
RFQTGWMKFV QDNQLEIGDV CVFVMTNDIK RLIDVVLFRA TEATKCTLSG EGNRRPTISS  420
SRKIKREA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	8e-18	B3 family protein