PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g907290.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 393aa MW: 43957.1 Da PI: 4.3203

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g907290.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.2	3.6e-11	2	60	43	101
DUF260 43 lkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++l+ lp +er a ++++eA+ara dP+yGa++ il+lq+q+ + +a+l++++e+l Pd.00g907290.m01 2 SRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQAQLDEAHEQL 60 578899999*********************************************99985 PP
2	DUF260	98.8	5.2e-31	130	231	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l++lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + +a Pd.00g907290.m01 130 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGASKMSRILSTLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQA 222 7*******************999856************************************************************* PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g907290.m01 223 QLDEAHEQL 231 **99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MSRILSMLPM SERAVASWTM TFEAHARAVD PIYGATSYIL DLQEQVLNIQ AQLDEAHEQL 60 ACAIAPIADP NQDLENSIEQ SEVANPTEQA AVAKPTEFES LPQFSFTHTN NVYNENMNLN 120 YHMSSRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAS KMSRILSTLP 180 MSERAVASWT MTFEAHARAV DPTYGCVSYI LDLQEQVLNI QAQLDEAHEQ LARAVAPVAN 240 PNQDMENSNE QSEVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGSYK NTVNIPTENV 300 ADGWVNNEGT SSMCFFDMEW SFEDVDELLV DPWCLNMGKV QALTASTPAA DEWLVTERAK 360 AQWKKYKAMV DDATLKTDIS AFGFSCSPQE TAG

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MSRILSMLPM SERAVASWTM TFEAHARAVD PIYGATSYIL DLQEQVLNIQ AQLDEAHEQL  60
ACAIAPIADP NQDLENSIEQ SEVANPTEQA AVAKPTEFES LPQFSFTHTN NVYNENMNLN  120
YHMSSRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAS KMSRILSTLP  180
MSERAVASWT MTFEAHARAV DPTYGCVSYI LDLQEQVLNI QAQLDEAHEQ LARAVAPVAN  240
PNQDMENSNE QSEVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGSYK NTVNIPTENV  300
ADGWVNNEGT SSMCFFDMEW SFEDVDELLV DPWCLNMGKV QALTASTPAA DEWLVTERAK  360
AQWKKYKAMV DDATLKTDIS AFGFSCSPQE TAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-41	LBD family protein