PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g908390.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 260aa    MW: 28905.7 Da    PI: 6.3414
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g908390.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.74.7e-55811841101
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql+sfw++q   ie + dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifd
  Pd.00g908390.m01  81 QLQSFWAEQyqeIEAVMDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFD 173
                       89*****999899******************************************************************************** PP

             NF-YC  91 flvdivprdel 101
                       flvdivpr++l
  Pd.00g908390.m01 174 FLVDIVPREDL 184
                       ********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MDQQGHGHPT TIGVAGSAAQ ASYGVNPYQS GQMMGLSPTG SVGLMQSPTQ PAGPPPSSQL  60
AQHQLAYQHI HQQQQQQLQQ QLQSFWAEQY QEIEAVMDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGGNLPV GSSTDGVPYY YMPAQHAPQV GVPGMIVGKP VMDQTLYGQQ  240
THPYIAQPTW PQQQQPHKDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.33e-81NF-YC family protein