PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g908410.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 262aa    MW: 29045.8 Da    PI: 6.4324
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g908410.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.74.7e-55831861101
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql+sfw++q   ie + dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifd
  Pd.00g908410.m01  83 QLQSFWAEQyqeIEAVMDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFD 175
                       89*****999899******************************************************************************** PP

             NF-YC  91 flvdivprdel 101
                       flvdivpr++l
  Pd.00g908410.m01 176 FLVDIVPREDL 186
                       ********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MDQQGHGHGH PTTIGVAGSA AQASYGVNPY QSGQMMGLSP TGSVGLMQSP TQPAGPPASS  60
QLAQHQLAYQ HIHQQQQQQL QQQLQSFWAE QYQEIEAVMD FKNHSLPLAR IKKIMKADED  120
VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI  180
VPREDLKDEV LASIPRGGNL PVGSSTDGVP YYYMPAQHAP QVGAPGMIVG KPVMDQTLYG  240
QQTHPYIAQP TWPQQQQPHK DS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.35e-81NF-YC family protein