PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g915940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 239aa MW: 25927 Da PI: 8.2562

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g915940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.9	7.8e-14	109	133	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Pd.00g915940.m01 109 CGGCRTLLMHTRGATSVRCSCCHTV 133 ************************9 PP
2	zf-LSD1	46.7	5e-15	147	171	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Pd.00g915940.m01 147 CGNCRTTLMYPYGAPSVKCAVCHYV 171 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MKLLVERVSA KAVFVGHNHG LDWCCPYEKL WLCFARHTGY GGYGNWDRGA RIVEITQQPF 60 SIKSWIRMED GSRSSVVEYP EGNLVELLLS FEVLSMVILC GTEMAQLICG GCRTLLMHTR 120 GATSVRCSCC HTVNLAPASS QVAHVNCGNC RTTLMYPYGA PSVKCAVCHY VTNVGMTNMR 180 VPIPVHRPNG TANSGMAPST STAMPHSQSQ TVVVENPMSV DESGKLVSNV VVGVTTGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-59	LSD family protein