PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g926780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 543aa MW: 61026.9 Da PI: 8.1548

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g926780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	3	25	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H+r H Pd.00g926780.m01 3 HRCKLCNKTFSSGKVLGGHMRGH 25 79******************988 PP
2	zf-C2H2	11.3	0.001	80	100	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F + + H+r H Pd.00g926780.m01 80 CKVCGKRFDSMKAMFGHMRHH 100 *******************99 PP
3	zf-C2H2	16.4	2.5e-05	111	131	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+dCgk F + L+ H + H Pd.00g926780.m01 111 CKDCGKAFESLRALTAHTKIH 131 99****************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MEHRCKLCNK TFSSGKVLGG HMRGHGTKNS AKAEKKLKVS NVDFEGDDDE HAGYGLRVNP 60 KKSWKFSGSK VQASEKESLC KVCGKRFDSM KAMFGHMRHH SSRERKETQC CKDCGKAFES 120 LRALTAHTKI HSKRLRTSDG SQSISSEKLF VDFQYSTETM GLIRRKRSKR LRYKITPSSS 180 FSGMNESKYA TEFGQEVVDG AICLMIISRG GINWGRISSV TESSDNNSLS LEVQSPVQKN 240 RIMGNRGGIS VCNDTGNKIF EFGENDSGFA SDEEKTGKKL EVPIDRFYRG AECKRPKLDE 300 DSAFVGYDAE IEKESHGEME AILTEVELDV DIIEEEELDV TKLGSMKSGM KACDSGNNML 360 YGTESEIFAD SRKKREHKCR TCKKLFRSHQ ALGGHQRVHK ATNNCSGEKI VDSEDKIQIN 420 KLSKIEYSCK LAKLECTDNS EEQEMERATV TGFESKVHRC SICLKVFATG QALGGHKRVH 480 FGKDSETGTE QTRALKQRIS EICDVFELSQ PVKLEEENGD VEFKSWWLGN EHKRELLVGL 540 MPN

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MEHRCKLCNK TFSSGKVLGG HMRGHGTKNS AKAEKKLKVS NVDFEGDDDE HAGYGLRVNP  60
KKSWKFSGSK VQASEKESLC KVCGKRFDSM KAMFGHMRHH SSRERKETQC CKDCGKAFES  120
LRALTAHTKI HSKRLRTSDG SQSISSEKLF VDFQYSTETM GLIRRKRSKR LRYKITPSSS  180
FSGMNESKYA TEFGQEVVDG AICLMIISRG GINWGRISSV TESSDNNSLS LEVQSPVQKN  240
RIMGNRGGIS VCNDTGNKIF EFGENDSGFA SDEEKTGKKL EVPIDRFYRG AECKRPKLDE  300
DSAFVGYDAE IEKESHGEME AILTEVELDV DIIEEEELDV TKLGSMKSGM KACDSGNNML  360
YGTESEIFAD SRKKREHKCR TCKKLFRSHQ ALGGHQRVHK ATNNCSGEKI VDSEDKIQIN  420
KLSKIEYSCK LAKLECTDNS EEQEMERATV TGFESKVHRC SICLKVFATG QALGGHKRVH  480
FGKDSETGTE QTRALKQRIS EICDVFELSQ PVKLEEENGD VEFKSWWLGN EHKRELLVGL  540
MPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-17	C2H2 family protein