PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g928240.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 489aa    MW: 52693.4 Da    PI: 6.987
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g928240.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.32e-36672312134
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                             
  Pd.00g928240.m01  67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnsfpdtpkqlsdekrascghgfdsaeve 159
                       689*************************************************************88888777777666666666533322222 PP

               TCP  66 ..ssssasec.......eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                         +               +++++++++    + + +++a+s++s++s+ s l+l++      r kar+rarer ++++ +++
  Pd.00g928240.m01 160 leG------HghgdpnyHHHQNQNQGQ----HLSLSKSACSSNSETSKGSGLSLSQseirVNRVKARERARERAAKDKEKES 231
                       220......022211112233333333....3444555555666666666666666423366699****9998777766654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MEVEEIQAQA CKFPRIGNGS SRATNPAADD EDQDQSYLDL KRAATADAGN RLRGWHHSRI  60
IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA  120
ADAIAELPSL NNSFPDTPKQ LSDEKRASCG HGFDSAEVEL EGHGHGDPNY HHHQNQNQGQ  180
HLSLSKSACS SNSETSKGSG LSLSQSEIRV NRVKARERAR ERAAKDKEKE SNESASHIAH  240
HHQQNSSNLN NSISQSASFT ELLTGGIGTN SSNNNNSPTA AAHQQQNHGG EPILFHKAAA  300
AGGGGPMDYF SSGLLGLSSS TRTHHSSGFS SQIQLGMNSI PQTMSVVSPF SVSGDHHHNH  360
NPELQHFSFV PDHLIPVTTS SQPGNGGDYN LNFSISSSGG LAGFNRGTLQ SNSSSSPSLL  420
PHHLQRFSPI DGSSNLGLIA ACNIPTATEA GIQTTREKQR TDLDHDQSLA AHLSFFLESE  480
AKEAVATCE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.13e-44TCP family protein