PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g928720.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 473aa MW: 54343.3 Da PI: 4.6265

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g928720.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.3	2e-08	10	49	6	45
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k +r+v+fskRr g++ K + + +ae+ ++++s+ g+ Pd.00g928720.m01 10 KNRRYVSFSKRRSGLFSKGKDFCKKFEAEIGIVVLSEAGR 49 679**********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MEQKEAKQYK NRRYVSFSKR RSGLFSKGKD FCKKFEAEIG IVVLSEAGRP YWSPDNPSLD 60 AVLDRFMQTD EAPTNAVDFK VRQQKKRKRE EHDNEVQGQL AEEVKSCRTV KDMFSLRDKY 120 LVLLQDHSNK RMKGSHVLEK GKAKCVSTSP SNLSFEDSVW VEPISRHKDI CSSSTLKLDS 180 EHDHRLGNNN GVRCSHDDGW FWDEILKDGY TQGVLMEPIS KSEDVLYDST LNFESDRNVF 240 NTHHGNINGG EGSSWCEDWE DGKAQCALMQ PISKSEEVLH NSTQNLESNR NVLTDQHGNN 300 NDDDRTFWDR ILEYDKTHQL ANSEDVLFNS TSNFECDCLN NKNNGGDNNI SFWDKILEEG 360 KSECVSFQPI SESEDFLYNP SLNFESDNRG FDHYQGDNNS GGELCWNEEW EHGKDDGGCL 420 LDNDLDKIRE VIKETNHPSR DPIEHYLVWP GDDNTNNYNY EVDGVSSLSG YEK

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MEQKEAKQYK NRRYVSFSKR RSGLFSKGKD FCKKFEAEIG IVVLSEAGRP YWSPDNPSLD  60
AVLDRFMQTD EAPTNAVDFK VRQQKKRKRE EHDNEVQGQL AEEVKSCRTV KDMFSLRDKY  120
LVLLQDHSNK RMKGSHVLEK GKAKCVSTSP SNLSFEDSVW VEPISRHKDI CSSSTLKLDS  180
EHDHRLGNNN GVRCSHDDGW FWDEILKDGY TQGVLMEPIS KSEDVLYDST LNFESDRNVF  240
NTHHGNINGG EGSSWCEDWE DGKAQCALMQ PISKSEEVLH NSTQNLESNR NVLTDQHGNN  300
NDDDRTFWDR ILEYDKTHQL ANSEDVLFNS TSNFECDCLN NKNNGGDNNI SFWDKILEEG  360
KSECVSFQPI SESEDFLYNP SLNFESDNRG FDHYQGDNNS GGELCWNEEW EHGKDDGGCL  420
LDNDLDKIRE VIKETNHPSR DPIEHYLVWP GDDNTNNYNY EVDGVSSLSG YEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	4e-12	M-type_MADS family protein