PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g930710.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 180aa MW: 20591.7 Da PI: 10.4068

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g930710.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.7e-06	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g930710.m01 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	13.7	0.00019	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Pd.00g930710.m01 143 WKCEKCSKKYAVQSDWKAHSKVC 165 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MMSEDGLSIP STVKGLAQEL SSSPNPNPNT DNQLKRKRNL PGTPGKYPDA EVIALSPKSL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PERTCVHHEP 120 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKVCGTREY RCDCGTLFSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	106	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	5e-84	C2H2 family protein