PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g934370.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 486aa    MW: 54624.4 Da    PI: 5.6749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g934370.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056159175117
                       EEETTTTEEESSHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                       y+Cp+Cgk+++  + L+
  Pd.00g934370.m01 159 YVCPNCGKRYNALDALQ 175
                       9**********999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MSIEPFNKLV KLVGRAFYDD ITKGDNQPKT GRSDNRGIAV VVLDALSRRQ WVREEDLAKD  60
LKLHSKQLRR TLRFFEEEKL VTRDHRRETA KGAKMHNAAV AATIDGLPAK EGEEKVKMHT  120
HSYCCLDYAQ ISDVVRYRVQ RMKKKLKDEL EDKNTVQEYV CPNCGKRYNA LDALQLVSME  180
DEYFHCESCN GELVAESDKL ASQEVGDGDD NARRRRREKL KDLLQKMEAQ LKPIYDQLNR  240
VKDLPAPEFG GLQAWEARAS AAKRAENGES NGMDPSKSSH GLGYGGTPMP FLGDTKVEVD  300
FSGVEGKGKD IKSEADGAGL KVLPPWMIKQ GMNLTKEQRG EVKQEAKMDG SGSLAAPEYS  360
EDKKFNTENN EKNLQDEYLK AYYAALIKRQ EEEEAKKALE SSETCVSDGP SGMSPSRQVG  420
MKSKRDEDEG DDNVDWEEAP ITGNEENYKT GRKAESARTV LRTFMGLSSS FEGFVYIELC  480
VGTVRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219RRRRREK
2214220RRRRREK