PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g937970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 515aa MW: 57055.2 Da PI: 8.5798

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g937970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	411	433	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Pd.00g937970.m01 411 ECPQCGAKFSSVTTLVDHVEKvH 433 5*****************99888 PP
2	zf-C2H2	14.9	7.9e-05	450	471	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ L+ H + H Pd.00g937970.m01 450 CPKCSKGFRDPVALVEHVERdH 471 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MLWRTLVNVC MLLGNLTFGK LAAKCLLELE PGEAGSYILV SNMYARGGMF DDAAKVRTVI 60 NDLKVNKEAE DNRDEGILVK ELPYYSNLVG TVLPEHTRFF LVINSNDRDR VFEARNSWPT 120 SNDPVSCGEN FGVDLGFRGF GVLLYPRKAR SKKLRTIQSR NKSRDYKISS NLILDCLVAE 180 IESHLVRPVA ACYLGRHCYV ADCQQIDFLP FTCDSCHQVF CLEHRSYIKH NCPKADRQNV 240 TVVICPLCAK GVHLIPDEDA NITWERHVNA ECDPSNYEKA TKKKKCPIPG CKELLTFSNT 300 IKCRDCTVDH CLKHRFGPDH KCPGPKKPTA GFPFSGLLSR SRKEVSKPNH APAASSSKWS 360 NSFLTAASSF RASAEASVAK LSSELSQKWQ IAKDGAGQSS SSGSRNGQLE ECPQCGAKFS 420 SVTTLVDHVE KVHEKGGNRA GVKKMTIDAC PKCSKGFRDP VALVEHVERD HGGGFSSLRS 480 ALAGIQTRLV FVQFERYPSQ FLSLSFPSLH PELSS

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MLWRTLVNVC MLLGNLTFGK LAAKCLLELE PGEAGSYILV SNMYARGGMF DDAAKVRTVI  60
NDLKVNKEAE DNRDEGILVK ELPYYSNLVG TVLPEHTRFF LVINSNDRDR VFEARNSWPT  120
SNDPVSCGEN FGVDLGFRGF GVLLYPRKAR SKKLRTIQSR NKSRDYKISS NLILDCLVAE  180
IESHLVRPVA ACYLGRHCYV ADCQQIDFLP FTCDSCHQVF CLEHRSYIKH NCPKADRQNV  240
TVVICPLCAK GVHLIPDEDA NITWERHVNA ECDPSNYEKA TKKKKCPIPG CKELLTFSNT  300
IKCRDCTVDH CLKHRFGPDH KCPGPKKPTA GFPFSGLLSR SRKEVSKPNH APAASSSKWS  360
NSFLTAASSF RASAEASVAK LSSELSQKWQ IAKDGAGQSS SSGSRNGQLE ECPQCGAKFS  420
SVTTLVDHVE KVHEKGGNRA GVKKMTIDAC PKCSKGFRDP VALVEHVERD HGGGFSSLRS  480
ALAGIQTRLV FVQFERYPSQ FLSLSFPSLH PELSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-112	C2H2 family protein